Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02008 ATGGAAACACGTGACATGGATCCTGACGTTCTTCGCTGGGGTCTTCATCTCCTAGATGTTTGTACACTTTCCCATCGTGGTTCGCCAAGTATTGTAACTCAATATGATCCAGATTTAAGCCAAGTTGAATATGTTAGAGAAGGCTTCTGTCAGCATGAGTATGTGGATAATGATGAGGCTGTTGCACGAGCTTATCAAGAAGAATTGTCTCGACTTGATTCTATGGGAGCTTCTGGGATATCCAATTTTGAGAATGAGGGAATGCAGGGATCTGTTTATACGCAAGATTGGTCTCATTCTTCAAATGGAAACTATAACTTTGATGAGTCTTGCCAGAACTCTGTGGACGAGTCCCATAATATGAAAGAAGAGGAGAATTATGTTTCAAGTGAAAGGGGAGATGTTGTACATGAAAATGATGTTTTTGGTTCGTCTTCTGGGCAAGTAGAGGTACCTGATACTAATGATGACTTCTGGGATTCACTGGAAATATCGGATGAATCTTCTCTTGATGGTGAAGTTGGCAAAAGATTAAACCGGATGGTTCCCATTCCTCATATTCCTAAAACCAATGAAAAAATACCATCTGATGATGAACAAATATCAGATCATCAAAGGCTTCTAGACAGATTGCAGTTATATGATTTGGTTGAGTGTAAAGTTCAAGGAGATGGTAACTGCCAGTTCCGTTCTTTATCAGATCAACTCTATCGTTCTTCAGACCACCACAAATTTGTGCGGGAGCAAATTATTGAACAGCTCAAATCTCACCCAGAAATATATGCTGGTTATGTTCCTGGTGCTTATAGTGATTATTTGAAAAAGATGAGCAAGAGTGGTGAATGGGGTGATCATGTCACATTGCAGGCTGCTGCAGATTGGTATGGTATCAAAATTTTTGTTATTACATCTTATAAGGACACGTGTTACATCGAGATTAATCCACAGATACAGAAGTCTGGAAGAGTGATATGTCTGAGCTTTTGGGCAGAGGTGCATTACAACTCAATTTATCCAGAAGGAGAATTGCCCTTATCTCATACAAAGAAAAAGAAGAAATGGTGGAATTTCGGTTGA 1077 0.3946 METRDMDPDVLRWGLHLLDVCTLSHRGSPSIVTQYDPDLSQVEYVREGFCQHEYVDNDEAVARAYQEELSRLDSMGASGISNFENEGMQGSVYTQDWSHSSNGNYNFDESCQNSVDESHNMKEEENYVSSERGDVVHENDVFGSSSGQVEVPDTNDDFWDSLEISDESSLDGEVGKRLNRMVPIPHIPKTNEKIPSDDEQISDHQRLLDRLQLYDLVECKVQGDGNCQFRSLSDQLYRSSDHHKFVREQIIEQLKSHPEIYAGYVPGAYSDYLKKMSKSGEWGDHVTLQAAADWYGIKIFVITSYKDTCYIEINPQIQKSGRVICLSFWAEVHYNSIYPEGELPLSHTKKKKKWWNFG 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02008 358 Pfam OTU-like cysteine protease 222 310 IPR003323 -
Cca02g02008 358 PANTHER OTU DOMAIN CONTAINING PROTEIN 22 357 - -
Cca02g02008 358 SUPERFAMILY Cysteine proteinases 178 339 IPR038765 -
Cca02g02008 358 PANTHER OTU-LIKE CYSTEINE PROTEASE DOMAIN CONTAINING PROTEIN 22 357 - -
Cca02g02008 358 ProSiteProfiles OTU domain profile. 216 340 IPR003323 -
Cca02g02008 358 Gene3D - 198 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02008 Cca-Chr2 39940937 39947739 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02008 - - gmx:100820379 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00439 02 9247901 9254498 Cca02g02008 02 39940937 39947739 ECH
Cca02g02008 02 39940937 39947739 Cca02g02008 02 39940937 39947739 ECH