Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02003 ATGGAGCTTTCCCACGCGGCGGCCAACCGCTCTGAGCCGGGTTTCAGGGCGGAGATCGACACATCGGCGCCCTTCGAATCGGTGAAGGAAGCCGTCACGCGGTTCGGCGGCGTTGGTTATTGGAAACCCATTATTCATGGTCTTAGTAATACCCACTTTGTTCCTCCTCAGCAGCATGACACAGAAGAGCTTGACGCTGGAAAGCTGGAGGAGCAAGCTGGTATGTTGGAGAAAGAGCTGATCCTGAAAGAAAGGGAAACTCTTGATGTCTTAAAAGAGTTGGAAAGTACCAAAAGGCTTGTGGAGAATTTGAAAACAAAGCTACAGAAAGAAGAATCCATGGCGAATTTGAATTTTCAGATGAGTGTGTGCAATGATATATCTTCTGTTAAGGAAGATGAGAAGGAAGATAAGGAAAACCAAGTGAGTAATGTTGTTCATCATTCATCGTCCCCGGGTTTAATATTAATGGAATTGAAGCAAGCGAAGTTGAATCTGAACAGAACTACAAGTGATATTGCTGATGTTCGTGCTTCTGTTGAATCACTCAATAAGAAGTTAGAGAATGAAAGACTGTCACTTGAGAAAACCCGTGAGAGGTTAACTCAGAATTCTTCAAAGATATGTTCTCTTGAGGAAGAGCTAAACCAGACAAAACTAAAACTGCTAGTGGCCGGTTCAGATAACCCTTCGGACATTACAAGAGAGCTTCAGCGTTTAAGTTCTGAGTCAGAGCATTTCAAGAAATTGGGAGAAGCTGCAAAATCAGAAGTCTTGAAGGCAATGTCTGAGATTGAACAGACAAAAGCTATGATCAAAACTGCCGAAATCCGGCTGGTTGCTGCCCGAAAAATGAAGGAAGCTGCTAGAGCAGCAGAAGCTGCGGCCCTTGCTGAGATCAAGGCTTTATCTCATCATGAGAATTCACCTGGAGATGATTGTGTGCAAAAGCATGATGGAGTTACCCTTTCCTTTGAAGAATACACTGCTCTTACGTGCAAGGCACGAGAGGCAGAGGAACATTCTAAGAAGAGAGTTGTTGATGCAATGCTTCTAGTTGATGAAGCAAACATATCAAAAATGGACATTTTGAAGAAAGTGGAGGAAGCCACAGAAGAAGTTAAGACCAGCAAGAAGGCTCTTGAAGATGCTCTAGAAAGGGTAGAGGCTGCAAATAGAGGAAAGCTAGCCGTTGAAGAGGCTTTAAGGAAGTGGCGATCAGAGGGTCATAAACGTCGTTCTTCTATACATAGCTCTACAAAGTTTAAAAATGCTTACCCTTCCCATAGGAAGGGTTCTTCTCGGTTACTTGATGTCAATGGGGTGAATCTGTTGAATGATGAAGCCAAGCCTGTTCTGAAGCCAACACTGTCTATAGGGCAAATATTGAGCAGGAAGTTGATGATGCCGGAAGAGTATGAAGCCGCAGCGATGCTTAGAGAGCGAAGCTCGGTGAAACGGAAGGTATCTCTTGGTCAGATGTTAGGGAAACATAATGCAGATCCATCCTTTGACAGGCAAGCTGAGAAGGAAAATGGTCAGAAGGTGTTTTCTGCTAAGAGAAAGAAATTTGGATTTGGTCGATTCTCCCTTCTTTTGACAAAACAACAAAAGAAGAAGAAGCCAACACTGAACTTGAGGTGA 1644 0.4373 MELSHAAANRSEPGFRAEIDTSAPFESVKEAVTRFGGVGYWKPIIHGLSNTHFVPPQQHDTEELDAGKLEEQAGMLEKELILKERETLDVLKELESTKRLVENLKTKLQKEESMANLNFQMSVCNDISSVKEDEKEDKENQVSNVVHHSSSPGLILMELKQAKLNLNRTTSDIADVRASVESLNKKLENERLSLEKTRERLTQNSSKICSLEEELNQTKLKLLVAGSDNPSDITRELQRLSSESEHFKKLGEAAKSEVLKAMSEIEQTKAMIKTAEIRLVAARKMKEAARAAEAAALAEIKALSHHENSPGDDCVQKHDGVTLSFEEYTALTCKAREAEEHSKKRVVDAMLLVDEANISKMDILKKVEEATEEVKTSKKALEDALERVEAANRGKLAVEEALRKWRSEGHKRRSSIHSSTKFKNAYPSHRKGSSRLLDVNGVNLLNDEAKPVLKPTLSIGQILSRKLMMPEEYEAAAMLRERSSVKRKVSLGQMLGKHNADPSFDRQAEKENGQKVFSAKRKKFGFGRFSLLLTKQQKKKKPTLNLR 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02003 547 MobiDBLite consensus disorder prediction 497 516 - -
Cca01g02003 547 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 10 541 - -
Cca01g02003 547 Gene3D - 155 309 - -
Cca01g02003 547 Coils Coil 265 292 - -
Cca01g02003 547 PANTHER MYOSIN HEAVY CHAIN-LIKE 10 541 - -
Cca01g02003 547 Coils Coil 91 114 - -
Cca01g02003 547 Coils Coil 66 86 - -
Cca01g02003 547 Pfam Weak chloroplast movement under blue light 17 112 IPR008545 -
Cca01g02003 547 Pfam Weak chloroplast movement under blue light 115 412 IPR008545 -
Cca01g02003 547 MobiDBLite consensus disorder prediction 502 516 - -
Cca01g02003 547 Coils Coil 353 391 - -
Cca01g02003 547 Coils Coil 166 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02003 Cca-Chr1 46854257 46857337 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02003 - - gmx:100783770 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01663 05 36006286 36023292 Cca01g02003 01 46854257 46857337 ECH
Cca01g02003 01 46854257 46857337 Cca01g02003 01 46854257 46857337 ECH
Cca07g01722 07 43282384 43286429 Cca01g02003 01 46854257 46857337 PCT