Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01239 ATGAGCTCCGGGGACCTCCTCAGCATCGAACCTCTCGAACTCAAGTTCCCCTTTGAGCTGAAGAAGCAGATCTCGTGTTCTCTTCAATTGTCTAATAAGACTGATAGCTATGTAGCTTTCAAGGTGAAAACGACCAATCCTAAGAAGTATTGTGTGCGTCCAAACACTGGAATTGTCTTGCCAAGATCTACCTGCGATGTTATGGTTACTATGCAAGCGCAAAAAGAAGCTCCATCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGTGTAAAAACTGATGATGGTGTCAGTCCGAAGGATATCTCTGCAGAAATGTTCAACAAGGAGGCCGGGCATGTTGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTCTCTCCGCCTCAACCACCATCTCCAGTCCCAGAAGGTTCGGAGGAAGGGTCGTCACCTAGAGGTTCTGTTTCGGAAAATGGAAATGTCAATGGTGCTGACTTCGCACAAGTAACAAGAGGATTTGCTGAACGGCCCGAGGCTCAAGACAAATCGGCAGAGGCAAGAGCTCTAATCGCAAGGCTGACAGAAGAAAAGAATACTGCAATTCAACAAACTAGCAAGCTCCGCCAGGAATTAGAGCTGCTGAAGCGTGAAAGCAACAAAAATCGTGGTGGAGTTTCATTTGTCTTTGTCATATTAATTGGCTTACTTGGCATAATCATGGGATATCTCATGAAGAAGGCCTAA 726 0.4518 MSSGDLLSIEPLELKFPFELKKQISCSLQLSNKTDSYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDVMVTMQAQKEAPSDMQCKDKFLLQSVKTDDGVSPKDISAEMFNKEAGHVVEECKLRVLYVSPPQPPSPVPEGSEEGSSPRGSVSENGNVNGADFAQVTRGFAERPEAQDKSAEARALIARLTEEKNTAIQQTSKLRQELELLKRESNKNRGGVSFVFVILIGLLGIIMGYLMKKA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01239 241 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Car07g01239 241 Coils Coil 170 215 - -
Car07g01239 241 PIRSF VAMP_assoc_prot 1 240 IPR016763 GO:0005789
Car07g01239 241 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 239 IPR016763 GO:0005789
Car07g01239 241 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 1 239 - -
Car07g01239 241 MobiDBLite consensus disorder prediction 127 155 - -
Car07g01239 241 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Car07g01239 241 Gene3D Immunoglobulins 2 130 IPR013783 -
Car07g01239 241 SUPERFAMILY PapD-like 2 141 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01239 Car-Chr7 11226333 11231830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01239 - - gmx:100527687 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01239 07 11226333 11231830 Car07g01239 07 11226333 11231830 ECH
Car08g00297 08 2338287 2342084 Car07g01239 07 11226333 11231830 PCT
Car07g01239 07 11226333 11231830 Car08g00336 08 2640852 2644973 PCT