Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02408 ATGGTGTTGAAGAAGAGGCTAGATTATGGATTCAATGGCTTTCAGGTCCCCTTTGTACCTAGAGCTCCCAGATCTGCTAGAAGGAGGGTCCTTTCCAAGACAGTGGCTGAGGATGGTCAAGCCTTTGAGCTTCTGGCATCTCTAGCTGGCAAGTTATTGCAGGAGAGTGCAAGTTCTTCTGCTTCTAGCAATGCATCTGAAGGAAATCATCAGCCTGCCTTTGACAAAGATGTTGTTGAGCAGGAAAGGCAAGATGAAGTAAAACCATTAGAAATAGATTGCATTCACCAGGGAAGTTGTGCAGAGAGTATCTTTATGTCTGAGGTGGCATCAGAGAACACTAGTCAGAAACCTCTTGTGAAAGTTGAGACGGAGACTGTACTTGAACGCACCTCGGCAAAAAAGAATAACTTAGAATGCTTGGAGAAAGTTGAACCTGATTTGAAATCCAAAGTTTGTAATTTGGAGGATACATTTGGACATTACTCTAGTAGATTAGCACAAGCACCCACACCTCAAGATTTTAGGGAGTTTAGACAACAAGAAGCTGGGAGTTTGGGCATTGGGGTATCAACTTTGGCTAGAAAATATAGTTTGGAGGATCCATTGGCATTGTGTGTTAATCCTCCTGCATTAGTTGACTCTAACAGTAATGTTAAGTCCCCCTTTTGTAGAGAATCTATTCCCAATGAATCCTTTTCCAGGCATGGGAATGATAGTAAGTTAGGCTTTagagatgatgatgaaaactttttaaaatttaataagctTAGCACCAGGTCAAAGGCATTCAGGCCTACACAACGAATTGGTCACCGAAGAATCAGGAAGCTTCTTACTTCCAAATACTGGAAGGCTGCTCTGAAGTTGAAGGATTGCGAACTTTCTAGATCTGATACGGAAGTAAGACCTCTTCACCGTAAGAGGAAGACTTGTCATGGTTTTGAAAGATATCAGCATGACCCACTTTTGAAGAGAAGGAAATTCTTTGACCGGGGTTCAGTTATAACTTCTGATGGAGGATTCAGCAGTGAGAGCGTGTGCAATTCTCCTGAGAAAGGAATTGATGGAGGCAACCCTGGCTCATCTTCAAAACTGCATGTATCTAAGGATTCTCAtgTGAAGTTTAGCATCAAGTCATTCAAGATACCAGAGCTTTATATTGAGCTTCCTGAAACTGCAACTATTGGTTCACTAAAGAGGACTATCACAGAATCAGTGACGGCCATACTTGGTGGTGGTGTGCGCATTGGTGTTCTTCTTCAGGGGAAGAAAGTTAGAGATGACAACGGAACTCTTCTGCAGACTGGTATATCttgtaaagaaaatttggatACCCTTGGTTTTGCGTTGGAGCCCTGCTCGTTACAAGCTTCTCCAATATGCGTTGGTGATCCTTCTTCCCAATGTGCAACATCCCAAGCTACTAGGTCACCAAGAACACATGTCCCACACTCGGGGATTAGTGATGCCTTAAATGACTCTTCCCAAACTGACTCTATAGTTGACAAAACACCAGATTCTAGAGCACTAGTTGCTGTTCCTCCAAGGAGCACAGAAGCATTGGCTGTGGTCCCTGTGAATCAGAAAGCTAGGCGCTCTCAGGTTATACAACGTCGAACCAGGAGACCATTCTCTGTCTCTGAAGTAGAAGCACTCGTTCATGCAGTTGAGGAACTTGGAACTGGAAGGTGGCGTGATGTAAAGTTGCGAGCTTTTGAGAATTCAGACCATAGGACCTATGTAGATTTGAAGGATAAATGGAAAACTTTAGTGCACACAGCAAGAATTTCCCCTCAACAAAGGAGGGGAAAGCCAGTTCCCCAGGAGCTCTTGGACAGAgtcttggctgcccatgcttgCTGGTCTCAGCATCAAGCCAAGCAGCAAGGTGGAACTTTGAAGATTACAGAAGCCTCGGTAGGAATTGGAAGGCACAATGGTGAAGACCTCCAACCAATCGCCATGGTGGTGTA 1976 0.4266 MVLKKRLDYGFNGFQVPFVPRAPRSARRRVLSKTVAEDGQAFELLASLAGKLLQESASSSASSNASEGNHQPAFDKDVVEQERQDEVKPLEIDCIHQGSCAESIFMSEVASENTSQKPLVKVETETVLERTSAKKNNLECLEKVEPDLKSKVCNLEDTFGHYSSRLAQAPTPQDFREFRQQEAGSLGIGVSTLARKYSLEDPLALCVNPPALVDSNSNVKSPFCRESIPNESFSRHGNDSKLGFRDDDENFLKFNKLSTRSKAFRPTQRIGHRRIRKLLTSKYWKAALKLKDCELSRSDTEVRPLHRKRKTCHGFERYQHDPLLKRRKFFDRGSVITSDGGFSSESVCNSPEKGIDGGNPGSSSKLHVSKDSHVKFSIKSFKIPELYIELPETATIGSLKRTITESVTAILGGGVRIGVLLQGKKVRDDNGTLLQTGISCKENLDTLGFALEPCSLQASPICVGDPSSQCATSQATRSPRTHVPHSGISDALNDSSQTDSIVDKTPDSRALVAVPPRSTEALAVVPVNQKARRSQVIQRRTRRPFSVSEVEALVHAVEELGTGRWRDVKLRAFENSDHRTYVDLKDKWKTLVHTARISPQQRRGKPVPQELLDRVLAAHACWSQHQAKQQGGTLKITEASVGIGRHNGEDLQPIAMVV 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02408 658 MobiDBLite consensus disorder prediction 59 82 - -
Bva12g02408 658 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 632 - -
Bva12g02408 658 MobiDBLite consensus disorder prediction 468 499 - -
Bva12g02408 658 Gene3D - 530 633 - -
Bva12g02408 658 SUPERFAMILY Homeodomain-like 543 624 IPR009057 -
Bva12g02408 658 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 632 IPR031105 -
Bva12g02408 658 ProSiteProfiles Myb-like domain profile. 537 592 IPR001005 -
Bva12g02408 658 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 537 596 IPR017930 -
Bva12g02408 658 SMART sant 541 594 IPR001005 -
Bva12g02408 658 MobiDBLite consensus disorder prediction 343 366 - -
Bva12g02408 658 CDD SANT_TRF 543 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02408 Bva-Chr12 18218371 18222946 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02408 - - gmx:100814318 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01372 02 17391083 17404323 Bva12g02408 12 18218371 18222946 ECH
Bva09g00125 09 573761 579348 Bva12g02408 12 18218371 18222946 ECH
Bva07g02521 07 20139027 20144389 Bva12g02408 12 18218371 18222946 ECH
Bva12g02408 12 18218371 18222946 Bva12g02408 12 18218371 18222946 ECH