Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00899 ATGGCGTCGTACAGAGCTGACGATGACTATGATTACCTTTTCAAAGTGGTTCTGATTGGAGACTCTGGTGTGGGCAAATCCAATCTTCTCTCTCGGTTCACTCGCGATGAATTCAACCTCGAGTCCAAGTCCACTATTGGTGTTGAATTCGCCACCAGGAGTATAAAGGTTGATGATAGATCATATCGTGCAATCACGAGGGCATACTACCGAGGAGCCGTTGGTGCATTACTGGTTTACGATGTCTCAAGACATGTTACATTTGAGAATGCAGAAAGATGGTTGAAGGAGTTGAGAGACCACACAGATTCCAACGTTGTAGTGATGCTTGTCGGCAACAAAGCAGACCTGCGTCGCCTGCGAGCAGTTTCTACCGAGGATGCCAAATCCTTCgctaaaaaggaaagaacttTCTTCATGGAGACATCGGCCCTCGAGTCTATGAATGTGGAGAATGCATTCACTCTAGTTTTAACTGAGATATATCATGTGGTAAGCAGGAAAACACTTGAAGCAGGGAATGATCCTGGGAGATTGCCTCAAGGGCAAACCATAAATATGGGCTCAAAGGATGGTGTTTCAGCTGTGAAGAAAGTTGGTTGCTGCTCTGCCTA 614 0.4479 MASYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATRSIKVDDRSYRAITRAYYRGAVGALLVYDVSRHVTFENAERWLKELRDHTDSNVVVMLVGNKADLRRLRAVSTEDAKSFAKKERTFFMETSALESMNVENAFTLVLTEIYHVVSRKTLEAGNDPGRLPQGQTINMGSKDGVSAVKKVGCCSA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00899 204 ProSiteProfiles small GTPase Rab1 family profile. 9 202 - -
Bva09g00899 204 SMART rho_sub_3 16 160 IPR001806 GO:0003924|GO:0005525
Bva09g00899 204 CDD Rab11_like 11 162 - -
Bva09g00899 204 Gene3D - 6 202 IPR027417 -
Bva09g00899 204 SMART ras_sub_4 11 164 - -
Bva09g00899 204 SMART rab_sub_5 14 164 - -
Bva09g00899 204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 172 IPR027417 -
Bva09g00899 204 Pfam Ras family 15 162 IPR001806 GO:0003924|GO:0005525
Bva09g00899 204 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 202 - -
Bva09g00899 204 TIGRFAM small_GTP: small GTP-binding protein domain 12 157 IPR005225 GO:0005525
Bva09g00899 204 ProSiteProfiles small GTPase Ras family profile. 1 204 IPR001806 GO:0003924|GO:0005525
Bva09g00899 204 PANTHER DRAB11-RELATED 1 202 - -
Bva09g00899 204 PRINTS Transforming protein P21 ras signature 14 35 - -
Bva09g00899 204 PRINTS Transforming protein P21 ras signature 139 161 - -
Bva09g00899 204 PRINTS Transforming protein P21 ras signature 104 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00899 Bva-Chr9 4638255 4638978 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00899 K07904 - tcc:18594102 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00899 09 4638255 4638978 Bva09g00899 09 4638255 4638978 ECH
Bva09g00678 09 3491870 3493782 Bva09g00899 09 4638255 4638978 ECH
Bva07g01893 07 16966452 16970303 Bva09g00899 09 4638255 4638978 ECH
Bva09g00899 09 4638255 4638978 Bva14g01465 14 7504440 7506848 ECH