Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00678 ATGCCTCCATACAGAGCGGACGATGATTACGATTACTTGTTCAAGGTTGTACTAATCGGAGATTCCGGTGTTGGCAAGTCCAATCTCTTGTCTAGATTTACCAAAAACGAATTCAGCTTGGAATCCAAATCCACCATTGGGGTAGAATTTGCTACCCGTAGCATTCAGGTGGATGACAAAATAGTAAAGGCGCAAATTTGGGACACCGCTGGCCAAGAAAGATACCGGGCAATCACAAGTGCATACTACCGTGGAGCTGTTGGCGCATTGCTAGTCTATGATATTACCAGACATGTGACTTTTGAAAATGTTGAGAGATGGTTGAAGGAGCTCCGAGATCACACTGATGCCAACATTGTAATCATGTTCGTGGGAAATAAGGCAGATCTGCGCCATTTGCGTGCCGTGTCCACGGAAGATGCCAAGTCATTTGCCGAGAGAGAAAACACATTTTTCATGGAAACCTCTGCACTAGAATCCTTGAATGTTGACAATGCCTTCACAGAAGTGTTAACTCAGATATATCATGTTGTGAGTAGGAAGACTCTTGAGATTGGCGATGATCCTGCTGCTGCCTTGCCCAAGGGGCAGACAATCAATGTTGGCGGTAAGGATGATGTTTCAGCTGTTAAAAATGCCGGATGTTGCTCTTCATA 656 0.4482 MPPYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIQVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHVTFENVERWLKELRDHTDANIVIMFVGNKADLRHLRAVSTEDAKSFAERENTFFMETSALESLNVDNAFTEVLTQIYHVVSRKTLEIGDDPAAALPKGQTINVGGKDDVSAVKNAGCCSS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00678 218 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Bva09g00678 218 SMART ras_sub_4 11 177 - -
Bva09g00678 218 ProSiteProfiles small GTPase Ras family profile. 1 218 IPR001806 GO:0003924|GO:0005525
Bva09g00678 218 SMART rab_sub_5 14 177 - -
Bva09g00678 218 Gene3D - 6 216 IPR027417 -
Bva09g00678 218 PRINTS Transforming protein P21 ras signature 55 77 - -
Bva09g00678 218 PRINTS Transforming protein P21 ras signature 152 174 - -
Bva09g00678 218 PRINTS Transforming protein P21 ras signature 117 130 - -
Bva09g00678 218 PRINTS Transforming protein P21 ras signature 37 53 - -
Bva09g00678 218 PRINTS Transforming protein P21 ras signature 14 35 - -
Bva09g00678 218 ProSiteProfiles small GTPase Rab1 family profile. 9 216 - -
Bva09g00678 218 SMART ran_sub_2 19 215 - -
Bva09g00678 218 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Bva09g00678 218 PANTHER DRAB11-RELATED 1 216 - -
Bva09g00678 218 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Bva09g00678 218 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Bva09g00678 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 183 IPR027417 -
Bva09g00678 218 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 216 - -
Bva09g00678 218 CDD Rab11_like 11 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00678 Bva-Chr9 3491870 3493782 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00678 K07904 - gmx:100781889 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00678 09 3491870 3493782 Bva09g00899 09 4638255 4638978 ECH
Bva09g00678 09 3491870 3493782 Bva09g00678 09 3491870 3493782 ECH
Bva09g00678 09 3491870 3493782 Bva14g01465 14 7504440 7506848 ECH