Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00310 ATGGCCAAGGCAGAGAAGAAGCCAGCCGAGAAGAAACCGGCCGAGGAGAAGAAGACAGCCGACAAGTCTCCGGCAGCTGGAGAGAAGAAGCCCCGCGCCGAGAAGAAAATACCGAAGGAAGGTGGTTCggacaagaagaagaagaggtcGAAGAAGAGCGTGGAGACATACAAGATATACATCTTTAAGGTGCTGAAGCAGGTTCACCCTGACATTGGTATCTCCAGTAAGGCTATGGGTATCATGAACAGCTTCATTAATGATATCTTTGAGAAGCTTGCTcaagagtcttccaagcttgCTCGCTACAACAAGAAGCCAACTATTACCTCTAGGGAGATCCAGACTGCTGTAAGACTGGTCCTCCCTGGTGAGCTCGCCAAGCACGCCGTTTCTGAAGGGACTAAGGCTGTTACTAAATTTACTAGTTCTTA 434 0.4447 MAKAEKKPAEKKPAEEKKTADKSPAAGEKKPRAEKKIPKEGGSDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00310 144 Gene3D Histone, subunit A 19 144 IPR009072 GO:0046982
Bva09g00310 144 SUPERFAMILY Histone-fold 29 144 IPR009072 GO:0046982
Bva09g00310 144 MobiDBLite consensus disorder prediction 1 53 - -
Bva09g00310 144 PANTHER HISTONE H2B.1-RELATED 4 144 - -
Bva09g00310 144 SMART h2b3 47 143 IPR000558 GO:0000786|GO:0003677|GO:0030527
Bva09g00310 144 Pfam Core histone H2A/H2B/H3/H4 4 120 IPR007125 GO:0003677
Bva09g00310 144 PANTHER HISTONE H2B 4 144 IPR000558 GO:0000786|GO:0003677|GO:0030527
Bva09g00310 144 ProSitePatterns Histone H2B signature. 112 134 IPR000558 GO:0000786|GO:0003677|GO:0030527
Bva09g00310 144 PRINTS Histone H2B signature 115 128 IPR000558 GO:0000786|GO:0003677|GO:0030527
Bva09g00310 144 PRINTS Histone H2B signature 98 115 IPR000558 GO:0000786|GO:0003677|GO:0030527
Bva09g00310 144 PRINTS Histone H2B signature 57 75 IPR000558 GO:0000786|GO:0003677|GO:0030527
Bva09g00310 144 PRINTS Histone H2B signature 76 96 IPR000558 GO:0000786|GO:0003677|GO:0030527
Bva09g00310 144 PRINTS Histone H2B signature 128 141 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00310 Bva-Chr9 1611215 1611882 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00310 K11252 - twl:119995051 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02099 04 20489816 20494539 Bva09g00310 09 1611215 1611882 ECH
Bva13g02499 13 18798063 18801530 Bva09g00310 09 1611215 1611882 ECH
Bva09g00310 09 1611215 1611882 Bva09g00310 09 1611215 1611882 ECH