Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02099 ATGTGGGCTCTTCGTCGAGCTTCTGTTCCTCTAAGGAGTCGAGGATTTAGTATGGGAACTTCTCGTGGTGCTTGTGTCAACTTAAGGGAAATTACTTGTGCGGAAGACAAGGCTGGATTCTCTGAGTCTTTTCAAAGAACATATGATAGACTTTTGCTGTCAAACACATTTTACCACACAGGACATGCTTCTCTGAAATTTTCTGTGAAAAAGCGTGAACTTTCTTCCCAAGCTGATGCAAGTAGCATCAAAGAGGAGGTTGATTTAGAAGATGGATTTTCTGAGCTGGAGAGACCTGCTGCTGACAAGGATgagaatgatgatgaagaattaGAACTATCTGATGACGGTGAGGATGTTGAGGAACCACAAAATGAACTGGAGTTATCAGAGACTGAGATTGATTCAGCTGAGAAAAAATCACGCGAGACAGGGGCTCGATCAGAACTATTCAAAGCAATGCTAAAATCTACAGGCTTGTCTGTTAATGATGTTTTGGACAAGTGGGTTGAAGAAGGGAAGGATCTAAGTAGTTCAGAGGTCTCATCAACCATGGCTAATCTTAGAAGGCGTCGAATGTATGGGAGTGCATTGCAGCTGTCAGAGTGGCTTGAGGCAAAAGAGCAAATTGACTTTGTTGAGAAAGACTATGCATCTCGACTTGATTTGCTTGCCAAAATGCACGGTCTTCATAAGGCAGAGAATTACATAGGTTCTATCCCAAATTCCTTTAGAGGGGAGATAATCTACCGCACGTTACTGGCTAACTGTGTCAGGAAGAACAAAGCTAAGAAAGCTGaggaaattttcaataaaatgagGGACTTAGAGTTCCCACTTACAACATTTGCTTGTGACCAGTTGCTTCTTCTGTATAAGAGGactaacaagaaaaaaatagccGATGTGTTATTGTTAATGAAGAAGGAGAATGTCAAACCCTCTCTTTTTACCTATAGACTCTTGATAGATGCTAAAGGTGGGTCCAACGATATTGCCGGAATGGATCAAATTGTTGACTCAATGAAAGCTGAAGGTGTTGAACCAGACTTTCAAATACAGGGAATCTTGGCTAAGCATTATGCTTCAGCTGGGCTCACACAGAAAGCTGAAGCTGTATTGACGGAGATGGAAGGAAGAAGCTTAAAAggaggaaaattaaaagagcATCTGTGGGTATGTCGATCTTTGCTTTGTAGCTATGCAGAGCTGGGAAATGCCGATGAAGTAGGGAGAATTTGGAAGGTCTGTGAATCAAATCCTGGGATTGATTTGAGTGTGGCTGCAATAGAAGCTTGGGGCAAgttgaagaaaattgaagaagcaGAGGCAGCTTTTGAGCAGGTGTTGAATGAATTGAACAAGCCTTCTTCCAGGCCCTATATAGCACTCCTTAAGGTTTATGCAAATAATAAGATGCTAAACAAGGGTAAGGATCTCATCAAGCGAATGGCAGATAGTGAGGGGAGAATAGGCCCACTGATCTTGAATCCACTTGTGCAACTTTATGTCCAATCAGGGGAAGTGGAGAGGGCAGACGCTATGTTACAAAAGGCTGTCCAGCAGAACAAGGTGAGGCCATTGTTCAGTACTTACATGACCATTATGGATGAGTATGCAAAGAGGGGTGATATCCATAATTCagaaaagatttttcataGAATGAGACTAGCTGGTTATACTTCTCGATTTACACAGTTCCAAGCTCTAGTGCAGACTTACGTAAATGCCAAGGTTCCAGCATATGGGATTCGGGAGAGGATAAAAGCTGATAATGTATTCCCTAACAAAGCGTTGGCTGGCCAGTTGGCTCTGGTTGATGCATTTAGGAAGACACGAGTTTCTGATATATTGGATTG 1859 0.4024 MWALRRASVPLRSRGFSMGTSRGACVNLREITCAEDKAGFSESFQRTYDRLLLSNTFYHTGHASLKFSVKKRELSSQADASSIKEEVDLEDGFSELERPAADKDENDDEELELSDDGEDVEEPQNELELSETEIDSAEKKSRETGARSELFKAMLKSTGLSVNDVLDKWVEEGKDLSSSEVSSTMANLRRRRMYGSALQLSEWLEAKEQIDFVEKDYASRLDLLAKMHGLHKAENYIGSIPNSFRGEIIYRTLLANCVRKNKAKKAEEIFNKMRDLEFPLTTFACDQLLLLYKRTNKKKIADVLLLMKKENVKPSLFTYRLLIDAKGGSNDIAGMDQIVDSMKAEGVEPDFQIQGILAKHYASAGLTQKAEAVLTEMEGRSLKGGKLKEHLWVCRSLLCSYAELGNADEVGRIWKVCESNPGIDLSVAAIEAWGKLKKIEEAEAAFEQVLNELNKPSSRPYIALLKVYANNKMLNKGKDLIKRMADSEGRIGPLILNPLVQLYVQSGEVERADAMLQKAVQQNKVRPLFSTYMTIMDEYAKRGDIHNSEKIFHRMRLAGYTSRFTQFQALVQTYVNAKVPAYGIRERIKADNVFPNKALAGQLALVDAFRKTRVSDILD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02099 619 MobiDBLite consensus disorder prediction 80 101 - -
Bva04g02099 619 MobiDBLite consensus disorder prediction 80 145 - -
Bva04g02099 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Bva04g02099 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Bva04g02099 619 Coils Coil 120 140 - -
Bva04g02099 619 SUPERFAMILY HCP-like 431 555 - -
Bva04g02099 619 Pfam Pentatricopeptide repeat domain 284 328 IPR002885 -
Bva04g02099 619 TIGRFAM PPR: pentatricopeptide repeat domain 249 279 IPR002885 -
Bva04g02099 619 TIGRFAM PPR: pentatricopeptide repeat domain 531 559 IPR002885 -
Bva04g02099 619 MobiDBLite consensus disorder prediction 102 131 - -
Bva04g02099 619 PANTHER OS12G0527900 PROTEIN 32 619 - -
Bva04g02099 619 PANTHER OS01G0280400 PROTEIN 32 619 - -
Bva04g02099 619 Pfam PPR repeat 461 485 IPR002885 -
Bva04g02099 619 Pfam PPR repeat 249 276 IPR002885 -
Bva04g02099 619 Pfam PPR repeat 530 559 IPR002885 -
Bva04g02099 619 Gene3D Tetratricopeptide repeat domain 246 427 IPR011990 GO:0005515
Bva04g02099 619 Gene3D Tetratricopeptide repeat domain 428 616 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02099 Bva-Chr4 20489816 20494539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02099 370 575 EF-hand Containing Proteins AT1G02150 25.229 3.36e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02099 - - qsu:112026484 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02099 04 20489816 20494539 Bva09g00310 09 1611215 1611882 ECH
Bva04g02099 04 20489816 20494539 Bva04g02099 04 20489816 20494539 ECH