Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02499 ATGTCCACGTGGGCTCTTCGTAGATCTTCGGTTCTTCTAAGGAGCCGAGGATATAGCTTAGGAACTACCCGTGATGCTTGTGTCAACTTAAGGAAAATTACTTGTGTGGAAGATGATGCTGGTATTTTTGAGTCTTCTCTAAGAACGTATTATGGGCTTTTTCCGTCAAAGACATTTTACCACACTGGACATGCTTCTCTGAAATTTACTGTGAATAGCCGTGAACTTTCTTCCCAAGTCGATGCAACTAGCAAGAAGGAGGAGGATGATTTGGGAGATGGATTTTCTGAGCTGGACAGGCCTGCTGCTGACAATGATGATGAATTAGAACTatctgatgatgatgaagatattGAAGGGCCACAAAATGAACTGGAGTTATCAGAGACTGAGATTGATTCAGCTGAGAAAAAATCACCAGGGAGAAGGGCTCAATCAGAACTATTCAAAGCTATCTTAAATTCTCCAGGCTTGTCTGTTCGTGACACTTTGGATAAGTGGATTGAAGAAGGGAAGAAACTAGAAAGGCCAGAGATCTCATTgacctttttcaatttaagaAAGCGTCGAATGTATGGGAGGGCATTGCAGCTCTCAGAGTGGCTTGAGGCAAAAAAGCAAATTGACTTTGTTGAGAGAGATTATGCATCTCGACTTGATTTGCTTGCCAAAGTGCGTGGTCTTCACAAAGCAGAAAGTTACATAGATTCTATCCCAAAATCCTTTAGAGGGGAGATAATCTACCGCACGTTATTGGCTAACTGTGTTAGTCAGACCAATGTTAAGAAAGCAGAggaaattttcaacaaaatgaaGGACTTAGAGTTACCGGTTACAGCATTTGCTTGTAACCAGTTGCTTATTCTGTATAAGAGGAGcgacaagaagaaaatagctGATGTGTTATTATTAATGGAGAAAGAGAATGTCAAACCCACTCCTTTTACTTATAGACTCTTAATAGATGCTAAAGGCCAGTCCAATGATATTGCCGGAATGGATCAAATTGTGGAGGCAATGAAGGCTGAAGGTGTTGAACTAGACTTACAAATACAGGGAGCCTTGGCTAAGCATTATGCTTCAGCTGGGCTCAAAGAAAAAGCTGAAGCTGTATTGACGGAGATGGAAGGAGGGAACTTGAAAGAACATCCTTGGGTATGCATATCTTTGCTTCCTATCTATGCTGACCTGGGAAAGGATGATGAAGTAGGAAGAATTTGGGAGATCTGCAAATCAAATCCTAGGATTGAGTGGTGTCTGGCTGCAATAGAAGCTTGGGGCAGgttgaagaaaattgaagaagcaGAGGCAGCTTTTGAGCTTATGTTGAATAAATTCAAGAAGCCTTCTTCCAGGCCCTATACAGCACTCCTTAAGGTTTATGCAAACCATAAGATGCTCTTGAAGGGTAAGGATCTCATTAAGCGAATGGCAGATAGTGGGTGTCGAATAGGTCCTTTGACCTGGGATGCACTTGTGAAACTCTATGTCCTATCAGGGGAAGTGGAGAAGGCAGACTCCATTTTTCATAAGGCAATGCAGCAGAACCAAATGAAGCCAATGTTTAGCACTTACATGGCCATTATGTATGAGTATGCCAAGCGGGGTGACATCCATAATTcagagaaaatttttcatagaaTGAGACAAGCTGGTTATACTTCTCGATATAAACAGTTCCATGCTCTAGTACAGGCTTATATAAATGCCAAGCTTCCAGCATACGGCATCCGGGAGAGGATGAGGGCTGATAATGTATTCCCTAACAAAGCGCTGGCTGCCCAGTTAACTCTAGTTGATGCTTTCAGGAAGACGCCCGTTTctgatttatttgattg 1838 0.3977 MSTWALRRSSVLLRSRGYSLGTTRDACVNLRKITCVEDDAGIFESSLRTYYGLFPSKTFYHTGHASLKFTVNSRELSSQVDATSKKEEDDLGDGFSELDRPAADNDDELELSDDDEDIEGPQNELELSETEIDSAEKKSPGRRAQSELFKAILNSPGLSVRDTLDKWIEEGKKLERPEISLTFFNLRKRRMYGRALQLSEWLEAKKQIDFVERDYASRLDLLAKVRGLHKAESYIDSIPKSFRGEIIYRTLLANCVSQTNVKKAEEIFNKMKDLELPVTAFACNQLLILYKRSDKKKIADVLLLMEKENVKPTPFTYRLLIDAKGQSNDIAGMDQIVEAMKAEGVELDLQIQGALAKHYASAGLKEKAEAVLTEMEGGNLKEHPWVCISLLPIYADLGKDDEVGRIWEICKSNPRIEWCLAAIEAWGRLKKIEEAEAAFELMLNKFKKPSSRPYTALLKVYANHKMLLKGKDLIKRMADSGCRIGPLTWDALVKLYVLSGEVEKADSIFHKAMQQNQMKPMFSTYMAIMYEYAKRGDIHNSEKIFHRMRQAGYTSRYKQFHALVQAYINAKLPAYGIRERMRADNVFPNKALAAQLTLVDAFRKTPVSDLFD 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02499 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Bva13g02499 612 PANTHER OS12G0527900 PROTEIN 53 612 - -
Bva13g02499 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Bva13g02499 612 MobiDBLite consensus disorder prediction 103 126 - -
Bva13g02499 612 SUPERFAMILY TPR-like 391 556 IPR011990 GO:0005515
Bva13g02499 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 520 IPR002885 -
Bva13g02499 612 PANTHER OS01G0280400 PROTEIN 53 612 - -
Bva13g02499 612 Pfam Pentatricopeptide repeat domain 282 325 IPR002885 -
Bva13g02499 612 MobiDBLite consensus disorder prediction 78 143 - -
Bva13g02499 612 MobiDBLite consensus disorder prediction 80 102 - -
Bva13g02499 612 Gene3D Tetratricopeptide repeat domain 244 419 IPR011990 GO:0005515
Bva13g02499 612 Gene3D Tetratricopeptide repeat domain 420 609 IPR011990 GO:0005515
Bva13g02499 612 TIGRFAM PPR: pentatricopeptide repeat domain 247 276 IPR002885 -
Bva13g02499 612 TIGRFAM PPR: pentatricopeptide repeat domain 454 483 IPR002885 -
Bva13g02499 612 Pfam PPR repeat 454 482 IPR002885 -
Bva13g02499 612 Pfam PPR repeat 488 511 IPR002885 -
Bva13g02499 612 Pfam PPR repeat 523 552 IPR002885 -
Bva13g02499 612 Pfam PPR repeat 247 273 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02499 Bva-Chr13 18798063 18801530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02499 151 552 EF-hand Containing Proteins AT1G02150 23.133 8.79e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02499 - - qsu:112026484 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02499 13 18798063 18801530 Bva09g00310 09 1611215 1611882 ECH
Bva13g02499 13 18798063 18801530 Bva13g02499 13 18798063 18801530 ECH