Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01508 ATGCTATTAATACCAGCATTATATGGAATCACTCTTGCATCACCAACAGTCACTTTACAATCTCCGTTCAAGTTAACAATGGCGCAAATGCTAACAAAATCAAGCTCATTTGAACCTTGTTTATGTTTTACAATACTCTTCTGGGACATTAGAATTAAGGGTTCTGTCTCATTACTCTCGTcttactttgattttttgtcTAGTTTTGCTTCCCAGAAATGGAAGGCTGCTTGGACCAGAACCAGAAATTCAACTACTCCTGAGCCGCCACTGAACCAGAGCTTGCCCTGCATTCAATCTCAATCCAGTGTAACATTAACCAAATATGAAGTTATTAGGCTGGTAGAAAACTTGGGATTAAATGTTGGGTTGGATGGTGATGGAATCGAAGAGGTGTTTGGCGAGCAAGAGATTTCAGAATTGTTCGAGAAAGAGCCACCCAGCATGGACGAGGTTAAGGATGTGTTTGATGTGTTCGATGAAAATAAGGATGGTTTCATAGAAGCAAGAGAGTTGCAAAGGGTGTTTTGCTGTTTGGGTCTCGAGAAAAATTTAGAGGAGTGTCTGAGAATGATTAGAGCAGTTGACAGAAATGGAGACGATCTAGTTGATCAAGATGAGTTTGTGGAGTTCATGGAACGTGGCTTTTCCAGTGATTCCTA 662 0.3973 MLLIPALYGITLASPTVTLQSPFKLTMAQMLTKSSSFEPCLCFTILFWDIRIKGSVSLLSSYFDFLSSFASQKWKAAWTRTRNSTTPEPPLNQSLPCIQSQSSVTLTKYEVIRLVENLGLNVGLDGDGIEEVFGEQEISELFEKEPPSMDEVKDVFDVFDENKDGFIEARELQRVFCCLGLEKNLEECLRMIRAVDRNGDDLVDQDEFVEFMERGFSSDS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01508 220 Pfam EF-hand domain pair 151 213 IPR002048 GO:0005509
Bva08g01508 220 SMART efh_1 187 215 IPR002048 GO:0005509
Bva08g01508 220 SMART efh_1 151 179 IPR002048 GO:0005509
Bva08g01508 220 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 46 216 - -
Bva08g01508 220 SUPERFAMILY EF-hand 131 213 IPR011992 -
Bva08g01508 220 ProSitePatterns EF-hand calcium-binding domain. 196 208 IPR018247 -
Bva08g01508 220 ProSiteProfiles EF-hand calcium-binding domain profile. 183 218 IPR002048 GO:0005509
Bva08g01508 220 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Bva08g01508 220 Gene3D - 105 220 - -
Bva08g01508 220 PANTHER CALCIUM-BINDING PROTEIN CML45-RELATED 46 216 - -
Bva08g01508 220 CDD EFh 151 212 IPR002048 GO:0005509
Bva08g01508 220 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01508 Bva-Chr8 7934672 7935334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01508 106 216 EF-hand Containing Proteins AT5G39670 45.133 2.46e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01508 K02183 - gmx:100788925 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01508 08 7934672 7935334 Bva08g01508 08 7934672 7935334 ECH
Bva08g01508 08 7934672 7935334 Bva03g02132 03 18771528 18772112 ECH
Bva08g01508 08 7934672 7935334 Bva04g00290 04 1760944 1761540 ECH