Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00290 ATGGAAAAGGCATCACAGAACGATAGCCCCTCAACTTCTTCTCCCTTTTATGGTTTGGTAGATCTTTTCGATTACAGTTCAGTTTTCAATAAAGTACAGagctttttcttctcaattttctcactttttcttctgTGCCATAATTATTCTTCTGGGAACTCAAAGATTAGAGAGGAAAAACACTTTTCAGAATCTGGGTTGAGCCAAAGAGAGAGTTTTCCCAATGAGAGAAGTAGAGAAGATGATGGGAAGCTTGGGAAAGAAGAGGTGAAGATGGTTATGGAAAAGTTGGGATTTTCTTGCAGCCCAGAAAGCGAGGAACTTGGGGAACGTTATGGTTCCAATGAAATTTCTGGTCTGTTTGATGAACAGGAACCGAGCTTGGAGGAGGTGAAGGAAGCTTTCGATGTTTTCGATGTGAACAGAGATGGGGTTATTGATGCAGTGGAGTTGCAGAGAGTTCTGTGTCTTTTGGGTGTGAAGGAAGCAATGGAGCTGAAGAATTGCCAGAAAATGATTAGcaaatttgatgaaaatggAGATGGAAGAATAGATTTCAGTGAATTTGTAGAAATTATGGAGAATAGCTtctgctg 596 0.3674 MEKASQNDSPSTSSPFYGLVDLFDYSSVFNKVQSFFFSIFSLFLLCHNYSSGNSKIREEKHFSESGLSQRESFPNERSREDDGKLGKEEVKMVMEKLGFSCSPESEELGERYGSNEISGLFDEQEPSLEEVKEAFDVFDVNRDGVIDAVELQRVLCLLGVKEAMELKNCQKMISKFDENGDGRIDFSEFVEIMENSFC 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00290 198 Pfam EF-hand domain pair 129 194 IPR002048 GO:0005509
Bva04g00290 198 Gene3D - 147 197 - -
Bva04g00290 198 ProSiteProfiles EF-hand calcium-binding domain profile. 164 198 IPR002048 GO:0005509
Bva04g00290 198 SUPERFAMILY EF-hand 78 193 IPR011992 -
Bva04g00290 198 Gene3D - 79 146 - -
Bva04g00290 198 SMART efh_1 168 196 IPR002048 GO:0005509
Bva04g00290 198 SMART efh_1 130 158 IPR002048 GO:0005509
Bva04g00290 198 ProSiteProfiles EF-hand calcium-binding domain profile. 126 161 IPR002048 GO:0005509
Bva04g00290 198 PANTHER CALCIUM-BINDING PROTEIN CML45-RELATED 12 198 - -
Bva04g00290 198 ProSitePatterns EF-hand calcium-binding domain. 139 151 IPR018247 -
Bva04g00290 198 ProSitePatterns EF-hand calcium-binding domain. 177 189 IPR018247 -
Bva04g00290 198 MobiDBLite consensus disorder prediction 60 85 - -
Bva04g00290 198 CDD EFh 130 193 IPR002048 GO:0005509
Bva04g00290 198 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 12 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00290 Bva-Chr4 1760944 1761540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00290 9 198 EF-hand Containing Proteins AT5G39670 46.114 6.84e-45 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00290 K02183 - gmx:100791756 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00290 04 1760944 1761540 Bva04g00290 04 1760944 1761540 ECH
Bva03g02132 03 18771528 18772112 Bva04g00290 04 1760944 1761540 ECH
Bva08g01508 08 7934672 7935334 Bva04g00290 04 1760944 1761540 ECH