LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g00884	ATGAGCGCTTCTAGGTTCATAAAGTGCGTCACTGTTGGGGATGGAGCCGTGGGCAAAACGTGTCTGCTAATCTCATATACCAGTAACACCTTCCCCACTGATTATGTTCCAACtgtttttgacaattttagtGCTAACGTGGTTGTCAATGGAGCCACTGTTAATCTGGGTTTGTGGGACACTGCCGGACAAGAGGATTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCAGATGTTTTCATACTGGCTTTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTTCCAAAAAGTGGATTCCGGAGTTGAAGCATTATGCCCCTGGTGTCCCAATAGTTTTGGTTGGCACAAAGCTTGACCTCCGGGATGATAAGCAATTCTTTGAAAACCATCCTGGTGCTGTACCTATTACCGCAGCTCAGGGAGAAGAGCTAAGGAAGCTGATCGGTGCACCTGCTTACATCGAATGCAGTTCAAAAACCCAGGAGAATGTGAAGGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCGCcgaagcagaagaaaaagaagggtaAAGCACAAAAGGCTTGTTCCATATTGTG	593	0.43	MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFENHPGAVPITAAQGEELRKLIGAPAYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKGKAQKACSIL	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g00884	197	CDD	Rop_like	6	178	-	-
	Bva08g00884	197	PRINTS	Transforming protein P21 ras signature	30	46	-	-
	Bva08g00884	197	PRINTS	Transforming protein P21 ras signature	47	69	-	-
	Bva08g00884	197	PRINTS	Transforming protein P21 ras signature	155	177	-	-
	Bva08g00884	197	PRINTS	Transforming protein P21 ras signature	109	122	-	-
	Bva08g00884	197	PRINTS	Transforming protein P21 ras signature	7	28	-	-
	Bva08g00884	197	PANTHER	NTGP2	1	197	-	-
	Bva08g00884	197	SMART	ran_sub_2	12	197	-	-
	Bva08g00884	197	ProSiteProfiles	small GTPase Rho family profile.	1	177	-	-
	Bva08g00884	197	SMART	ras_sub_4	4	180	-	-
	Bva08g00884	197	PANTHER	RHO FAMILY GTPASE	1	197	IPR003578	GO:0005525\|GO:0007264
	Bva08g00884	197	Gene3D	-	5	192	IPR027417	-
	Bva08g00884	197	Pfam	Ras family	8	178	IPR001806	GO:0003924\|GO:0005525
	Bva08g00884	197	ProSiteProfiles	small GTPase Ras family profile.	2	197	IPR001806	GO:0003924\|GO:0005525
	Bva08g00884	197	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	6	178	IPR027417	-
	Bva08g00884	197	SMART	rab_sub_5	7	180	-	-
	Bva08g00884	197	TIGRFAM	small_GTP: small GTP-binding protein domain	7	171	IPR005225	GO:0005525
	Bva08g00884	197	ProSiteProfiles	small GTPase Rab1 family profile.	2	197	-	-
	Bva08g00884	197	SMART	rho_sub_3	9	180	IPR001806	GO:0003924\|GO:0005525

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g00884	Bva-Chr8	4526957	4530332	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva08g00884	7	180	EF-hand Containing Proteins	AT5G27540	26.437	1.67e-16	75.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g00884	K04392		-	egt:105950043	369.777

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g00884	08	4526957	4530332	Bva11g01504	11	14358903	14362078	BWGD
	Bva06g01894	06	12924222	12927450	Bva08g00884	08	4526957	4530332	ECH
	Bva10g00938	10	7029061	7032162	Bva08g00884	08	4526957	4530332	ECH
	Bva08g00884	08	4526957	4530332	Bva08g00884	08	4526957	4530332	ECH