Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00938 ATGAGCGCCTCCAGGTTCGTTAAGTGCGTCACCGTCGGTGACGGCGCTGTCGGCAAAACCTGCTTGTTGATTTCGTACACTAGCAACACATTTCCTACGGACTATGTGCCAACCgtttttgacaattttagcGCTAATGTTGTTGTGGATGGAAGCACCGTAAACTTAGGATTGTGGGATACAGCTGGTCAGGAGGATTATAATAGATTGAGACCTTTAAGCTATCGTGGAGCAGATGTCTTTATACTTGCCTTTTCCCTTATAAGCAAGGCCAGCTATGAAAATGTTGCGAAGAAGTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAAttctagttggaacgaagttAGATCTTCGGGAGGACAAACGGTTCTTTGTGGACCATCCTGGTGCCGTGCCGGTTACTACGTCACAGGGAGAAGAATTGAGAAAGCTGATCGGCGCTCCTGCCTACATTGAATGCAGTTCAAAAACGCAGCAGAATGTGAAAGCCGTATTTGATGCTGCTATCAAAGTAGTTCTACAGCCaccaaagcaaaagaaaaagaggaaggcACAGAAGGCTTGTTCAATATTGTG 590 0.4186 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLREDKRFFVDHPGAVPVTTSQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKRKAQKACSIL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00938 196 CDD Rop_like 6 178 - -
Bva10g00938 196 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Bva10g00938 196 SMART ras_sub_4 4 180 - -
Bva10g00938 196 ProSiteProfiles small GTPase Ras family profile. 2 196 IPR001806 GO:0003924|GO:0005525
Bva10g00938 196 ProSiteProfiles small GTPase Rab1 family profile. 2 196 - -
Bva10g00938 196 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 196 - -
Bva10g00938 196 PANTHER RHO FAMILY GTPASE 1 196 IPR003578 GO:0005525|GO:0007264
Bva10g00938 196 Gene3D - 5 192 IPR027417 -
Bva10g00938 196 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Bva10g00938 196 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Bva10g00938 196 PRINTS Transforming protein P21 ras signature 30 46 - -
Bva10g00938 196 PRINTS Transforming protein P21 ras signature 7 28 - -
Bva10g00938 196 PRINTS Transforming protein P21 ras signature 47 69 - -
Bva10g00938 196 PRINTS Transforming protein P21 ras signature 155 177 - -
Bva10g00938 196 PRINTS Transforming protein P21 ras signature 109 122 - -
Bva10g00938 196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Bva10g00938 196 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Bva10g00938 196 SMART rab_sub_5 7 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00938 Bva-Chr10 7029061 7032162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00938 7 180 EF-hand Containing Proteins AT5G27540 27.011 3.27e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00938 K04392 - jre:109011240 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00938 10 7029061 7032162 Bva08g00884 08 4526957 4530332 ECH
Bva10g00938 10 7029061 7032162 Bva10g00938 10 7029061 7032162 ECH