Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01894 ATGAGCGCGTCCAGGTTCATCAAGTGCGTCACAGTCGGTGACGGCGCTGTCGGCAAAACCTGCTTGTTGATTTCGTACACTAGCAACACATTTCCAACGGACTATGTGCCAACCGTTTTTGACAATTTCAGTGCTAATGTTGTTGTGGATGGAAGCACTGTAAACCTAGGATTGTGGGATACTGCTGGCCAGGAGGATTATAATAGATTAAGACCTTTGAGCTATCGTGGAGCAGATGTCTTTATACTTGCCTTTTCACTTATAAGCAAGGCCAGCTATGAAAATGTTGCGAAGAAGTGGGTTCCTGAGCTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTAGTTGGAACAAAGTTAGATCTTCGGGAGGATAAACAGTTCTTTTTAGACCATCCTGGTGCGGTGCCTATTACTACATCACAGGGAGAAGAATTGAGAAAGCTGATTGGCGCTCCTGCCTACATCGAATGTAGTTCAAAAACGCAGCagAATGTGAAAGCTGTGTTTGACGCCGCTATTAAAGTAGTTCTCCAGCCAccaaagcaaaagagaaagaagaggaaggcACAGAAGGCATGTTCAATACTATG 593 0.4233 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWVPELRHYAPGVPIILVGTKLDLREDKQFFLDHPGAVPITTSQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKRKKRKAQKACSIL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01894 197 CDD Rop_like 6 178 - -
Bva06g01894 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Bva06g01894 197 SMART rab_sub_5 7 180 - -
Bva06g01894 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Bva06g01894 197 Gene3D - 5 192 IPR027417 -
Bva06g01894 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Bva06g01894 197 SMART ras_sub_4 4 180 - -
Bva06g01894 197 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Bva06g01894 197 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 197 - -
Bva06g01894 197 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Bva06g01894 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Bva06g01894 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Bva06g01894 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Bva06g01894 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Bva06g01894 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Bva06g01894 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Bva06g01894 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Bva06g01894 197 PRINTS Transforming protein P21 ras signature 109 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01894 Bva-Chr6 12924222 12927450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01894 7 180 EF-hand Containing Proteins AT5G27540 27.011 4.47e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01894 K04392 - gmx:100798550 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01894 06 12924222 12927450 Bva08g00884 08 4526957 4530332 ECH
Bva06g01894 06 12924222 12927450 Bva06g01894 06 12924222 12927450 ECH