Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02553 ATGGATGAGAAAGATAGTCTATGTTCATTAGATGGGAGGAGAATAACGATTTGCACTTTATTTAAGGATGCCAGAATGGTTTTTAAGTCGGACAGTCTTTGTCGGGAAATATTGTCAATTGCGTTGCCTGCAGCACTGGCTTTAACAGCCGACCCTATTGCTTCACTGGTTGATACAGCATTTATTGGCCAAATAGGTCCAGTGGAGCTTGCTGCTGTAGGAGTTTCCATAGCTCTGTTTAATCAAGTGTCAAGGATCGCTATTTTCCCACTTGTCAGTGTCACGACCTCTTTTGTGGCTGAGGAAGATACTATCGGTGCAGTGAGCCATCAGGTAGAGGAGAGTGAATTCTTGGAGGCAGGGTCGACTGTGAATTGTGAAACCAAAAAGTTCATACCAATAAAAGATACGGATAGAAGTGGAAAAATTGAGAATTCAGATTTGGTTGGTGGCAGCTTCAATATAGCGAAGGTTGAGCATAAGAGAAGACATATCCCTTCAGCTTCATCAGCTCTAGTCATTGGTAGCATCCTTGGTCTCATCCAGACAGTATTCCTCATATCTGCAGCAAAACCTTTATTGAACTTCATGGGAGTAACTTCCGACTCCCCTATGCTAAACCCTGCACGGCACTACCTGACATTGAGGTCCCTTGGTGCTCCTGCAGTTCTTCTCTCATTAGCCATGCAAGGAGTCTTCCGAGGATTTAAAGACACTAGAACTCCTTTATATGCCACAGtGGCAGGAGATGTAACAAACATAGTACTTGATCCTCTGTTCATCTTTGTATTCCGTCTCGGCGTCAATGGTGCAGCCATAGCTCATGTTATATCTCAgTACCTGATTTCAGTCATACTCCTTTGGAGGTTGATAAAACAAGTTGATCTTATACCTCCAAGCATCAAAGATCGGCAATTTGACCGATTTCTTAAGAATGgtttcttattattaatgagAGTTATTGCTGTAACGTTCTGTGTGACTCTTGCTGCTTCATTAGCTGCACGCCAGGGATCAACATCCATGGCTGCATTTCAAGTCTGCCTGCAGGTTTGGCTGGCGACATCTCTTCTTGCTGATGGTCTGGCTGTTGCTGGGCAGGCAATCCTTGCTGGCGCATTTGCAAACAAGGACTACGACAAGGCCACAGCAGCTGCTTCCCGAGTATTGCAGATGGGATTGGTTCTGGGATTGGTGCTTGCCCTCTTTCTCGGAACAGGGCTGCATTTTGgtgcaaaattatttacaagagATGTGAATGTCCTCCACTTAATTAGTGTTGGAATTCCGTTTGTTGTAGCTACTCAACCCATCAATTCTTTGGCATTTGTATTTGATggtgtcaactttggagcatcTGACTTCGCCTATTCAGCCTTCTCCATGGTTCTGGTGGCAATTGTCAGCATTATTTGTCTACTTATTCTATCCGCTGCTGGTGCTTTCATTGGAATTTGGGTTGCTTTGGCCATATATATGAGTCTTAGAGCAATTGCTGGCTTCTTAAGGATTGGAACAGGATCAGGGCCTTGGGAGTTCCTGAGGAGCTA 1550 0.429 MDEKDSLCSLDGRRITICTLFKDARMVFKSDSLCREILSIALPAALALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGAVSHQVEESEFLEAGSTVNCETKKFIPIKDTDRSGKIENSDLVGGSFNIAKVEHKRRHIPSASSALVIGSILGLIQTVFLISAAKPLLNFMGVTSDSPMLNPARHYLTLRSLGAPAVLLSLAMQGVFRGFKDTRTPLYATVAGDVTNIVLDPLFIFVFRLGVNGAAIAHVISQYLISVILLWRLIKQVDLIPPSIKDRQFDRFLKNGFLLLMRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQVWLATSLLADGLAVAGQAILAGAFANKDYDKATAAASRVLQMGLVLGLVLALFLGTGLHFGAKLFTRDVNVLHLISVGIPFVVATQPINSLAFVFDGVNFGASDFAYSAFSMVLVAIVSIICLLILSAAGAFIGIWVALAIYMSLRAIAGFLRIGTGSGPWEFLRS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02553 516 PANTHER PROTEIN DETOXIFICATION 13 515 - -
Bva07g02553 516 Pfam MatE 167 259 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva07g02553 516 Pfam MatE 318 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva07g02553 516 CDD MATE_DinF_like 35 506 IPR044644 -
Bva07g02553 516 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 13 515 IPR044644 -
Bva07g02553 516 TIGRFAM matE: MATE efflux family protein 43 486 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02553 Bva-Chr7 20281856 20288613 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02553 K03327 - gmx:100780165 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00091 09 437756 441629 Bva07g02553 07 20281856 20288613 BWGD
Bva07g02553 07 20281856 20288613 Bva07g02553 07 20281856 20288613 ECH
Bva09g00091 09 437756 441629 Bva07g02553 07 20281856 20288613 ECH
Bva13g02383 13 18054702 18060369 Bva07g02553 07 20281856 20288613 ECH