Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01308 ATGGAATACCATCGATCTTATAGTGACTCAGGCTCTTCATCCCACTCTAACCACCATCAAACTCCACtagcttctctttcttcacAACGCAGCCTTGCATCAGTTCCTTCCCTTAACTCACAATCTCATCACCAGCTAGTAAACCATCCTTCCAACGCCTATCACCGGTGCCTCACAACTCTCAAAGGCCACACATCCTACATATCCTCTCTAACCCTTTCAGGGAAATTCCTCTACACAGGTTCATCTGACAGAGAAATCAGATCCTGGAATCGTACCCCTTTTGACTCAGAATTTGATTCTGAACATTCAATCACAAACGTGGTAGTGGCTGGAAAGGGTGCAGTGAAGTCCCTGGTAGTTCAATCTGATAAGCTTTTTAGTGCTCACCAAGATCACAAAATCAGGGTATGGAAGATTAGCAACTACGAACCTGACCAACAGAAGTACACCCGTTTAGCCACCCTTCCAACATTTGGTGACCGAGCCTGCAAGGTTCTGATCCCCAAGAACCACGTTCAGATTAGAAGGCACAAAAAATGCACCTGGGTTCATCACGTTGACACAGTTTCTGCTCTGGCCTTGTCCGGGGACGGGAGCTTGCTCTGTTCAGTTTCATGGGATAGGACAATCAAAATTTGGCGAACCAGAGATTTCACCTGTTTAGAATCCATAAGCAACGCTCATGATGATGCCATAAACGCAGTTACACTTTCCGATGATGGGTATATTTACACTGGATCAGCAGATAAGAGAATTAAGGTGTGGAAGAAAGGCGAAGGAGATAAGAAACATTCTCTGGTTGACACGTTAGAGAAACACAACTCTGGGATTAATGCTTTAGCTCTCAGCAGTGACGGGTCCCTGTTGTATTCAGGTGCATGTGACAGATCCATATTGGTCTGGGAGAAGGATGAAGATGGCAAAATAGTGGTGATGGGTGCGCTTAGGGGGCACAGCCAGTCCATATTGTGCTTGGCCGTGGTATCGGATTTGGTTTGTAGTGGCTCTGCAGATAAAACAATTAGAGTCTGGAGAGGCGTTCATAGAGAGTATTCTTGTTTAGCTGTTTTAGAAGGGCATAGGGGTCCGATTAAGTGCCTAACTGCAGCTGTTGATCGTTATAACCCCTCTGAAGAATCTTTTCTAGTCTATAGTGGCAGTTTGGACTGCGACATCAAGGTCTGGCAGATTTTTGTTCCTATCATCTA 1211 0.4476 MEYHRSYSDSGSSSHSNHHQTPLASLSSQRSLASVPSLNSQSHHQLVNHPSNAYHRCLTTLKGHTSYISSLTLSGKFLYTGSSDREIRSWNRTPFDSEFDSEHSITNVVVAGKGAVKSLVVQSDKLFSAHQDHKIRVWKISNYEPDQQKYTRLATLPTFGDRACKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSGDGSLLCSVSWDRTIKIWRTRDFTCLESISNAHDDAINAVTLSDDGYIYTGSADKRIKVWKKGEGDKKHSLVDTLEKHNSGINALALSSDGSLLYSGACDRSILVWEKDEDGKIVVMGALRGHSQSILCLAVVSDLVCSGSADKTIRVWRGVHREYSCLAVLEGHRGPIKCLTAAVDRYNPSEESFLVYSGSLDCDIKVWQIFVPII 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01308 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 257 - -
Bva06g01308 403 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Bva06g01308 403 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Bva06g01308 403 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Bva06g01308 403 SUPERFAMILY WD40 repeat-like 56 398 IPR036322 GO:0005515
Bva06g01308 403 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 4 403 IPR045182 -
Bva06g01308 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Bva06g01308 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Bva06g01308 403 Gene3D - 23 163 IPR015943 GO:0005515
Bva06g01308 403 Gene3D - 164 400 IPR015943 GO:0005515
Bva06g01308 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Bva06g01308 403 MobiDBLite consensus disorder prediction 1 45 - -
Bva06g01308 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 214 - -
Bva06g01308 403 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 4 403 - -
Bva06g01308 403 SMART WD40_4 176 215 IPR001680 GO:0005515
Bva06g01308 403 SMART WD40_4 309 346 IPR001680 GO:0005515
Bva06g01308 403 SMART WD40_4 102 139 IPR001680 GO:0005515
Bva06g01308 403 SMART WD40_4 54 91 IPR001680 GO:0005515
Bva06g01308 403 SMART WD40_4 351 397 IPR001680 GO:0005515
Bva06g01308 403 SMART WD40_4 264 303 IPR001680 GO:0005515
Bva06g01308 403 SMART WD40_4 218 257 IPR001680 GO:0005515
Bva06g01308 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 91 - -
Bva06g01308 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 345 - -
Bva06g01308 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 345 IPR001680 GO:0005515
Bva06g01308 403 CDD WD40 57 397 - -
Bva06g01308 403 Pfam WD domain, G-beta repeat 221 257 IPR001680 GO:0005515
Bva06g01308 403 Pfam WD domain, G-beta repeat 184 214 IPR001680 GO:0005515
Bva06g01308 403 Pfam WD domain, G-beta repeat 353 396 IPR001680 GO:0005515
Bva06g01308 403 Pfam WD domain, G-beta repeat 56 91 IPR001680 GO:0005515
Bva06g01308 403 Pfam WD domain, G-beta repeat 268 302 IPR001680 GO:0005515
Bva06g01308 403 Pfam WD domain, G-beta repeat 314 345 IPR001680 GO:0005515
Bva06g01308 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 266 IPR001680 GO:0005515
Bva06g01308 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 91 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01308 Bva-Chr6 9872476 9874038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01308 176 398 Miscellaneous Gene Families AT5G08390 25.110 3.97e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01308 - - pop:7453749 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01086 11 12234185 12235444 Bva06g01308 06 9872476 9874038 BWGD
Bva06g01308 06 9872476 9874038 Bva05g00400 05 1983571 1984779 ECH
Bva06g01308 06 9872476 9874038 Bva06g01308 06 9872476 9874038 ECH