Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01086 atgggaCTTCTTCAATGTCCCCTGTGTTGCCACTCAGAAGATCAAGAACAGCAATTTCATGATCACTCCCACCACCTTCAGTCAGAATCGTCAGcctcttcttctttgtcttcCCAGCCAAGTCTACCCTCTGTTCCTTCCCTCACTCCGCTGTCTCAGCCACAGCAAACCACCCACCAACTCCTAGCCACCCTCAAGGGCCACTCCTCCGCCATCTCCTCCCTGGCCCTCCACGGCAAATTCCTGTACAGCGCCTCCTCCAGCAGCGAGATTCGAGCATGGAAAAAAGACCCTTTTGCTCTTCAGGCATCAAACAGTTCCAACAACGTGGTCGCAATCAGCAATGGAGCTATTAAGTCACTGGTGATTCTGGGCGATAAGCTATTTAATGCCCACCAAGACCACAAAATCAGAGTCACGAAAATCGAGGGCAATTATCCAAACCAGAGATTCAAATGCATAGCCACCCTTCCCACCTTTAACGATCGATTTTCCAAATTGTTCTTGGCCAAGAACTACGTCGAGGTTCGGCGGCACAAGAAATGCACGTGGGTTCATCATGTTGACACCGTCTCTGCTCTTGCTCTGTCTATAGACGGCTCTCTGCTTTACTCTGCTTCCTGGGACAGAACATTCAAAATCTGGAGAACCTCGGATTTCAAGTGTTTGGAGTCAATGAGGAACGCACACGACGATGCAATCAACGCCTTGGTTTTGTCCGATGATGGGTTTGTGTACACGGGTTCTGCAGATAAGAAAATCAAGGTGTGGAAGAAGGAAACAGGAGAGAAAAGTCACAGGCTTTTTGCCACGTTGGAGAAGCACAAATCTGCAGTGAATGCTCTGGCTCTTGGGAGAGATGGGTCTGTTTTATATTCCGGTGCTTGTGACAGATCAATCTTGGTGTGGGAAAAAGATAGCAGTGACATAAATGGTGGGGGAAACATGGTGTTGGTGGGTGCTCTGAGAGGGCACACCAAGGCCATTTTGTGCTTggtggcggcggcggcggACTTGGTGTGCAGTGGTTCCGCCGATAAGAGTGTGAGGATATGGCGGAGATCAGGGGTTAACAACAGTTATTCATGCTTGGCTGTGTTACAAGGCCATACACGGCCTGTGAAGTGCTTGGCTATGGAAGTTGACCGTAACAGTGACAATAATGGTGGTTCTGATGCTAATACTAATTCCTATATGGTTTACAGTGGTAGTTTGGATTGTGACATTAAGGTGTGGAAAATAGAGGTACCctttttttg 1259 0.4623 MGLLQCPLCCHSEDQEQQFHDHSHHLQSESSASSSLSSQPSLPSVPSLTPLSQPQQTTHQLLATLKGHSSAISSLALHGKFLYSASSSSEIRAWKKDPFALQASNSSNNVVAISNGAIKSLVILGDKLFNAHQDHKIRVTKIEGNYPNQRFKCIATLPTFNDRFSKLFLAKNYVEVRRHKKCTWVHHVDTVSALALSIDGSLLYSASWDRTFKIWRTSDFKCLESMRNAHDDAINALVLSDDGFVYTGSADKKIKVWKKETGEKSHRLFATLEKHKSAVNALALGRDGSVLYSGACDRSILVWEKDSSDINGGGNMVLVGALRGHTKAILCLVAAAADLVCSGSADKSVRIWRRSGVNNSYSCLAVLQGHTRPVKCLAMEVDRNSDNNGGSDANTNSYMVYSGSLDCDIKVWKIEVPFF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01086 419 SMART WD40_4 58 95 IPR001680 GO:0005515
Bva11g01086 419 SMART WD40_4 360 413 IPR001680 GO:0005515
Bva11g01086 419 SMART WD40_4 177 216 IPR001680 GO:0005515
Bva11g01086 419 SMART WD40_4 219 258 IPR001680 GO:0005515
Bva11g01086 419 SMART WD40_4 315 353 IPR001680 GO:0005515
Bva11g01086 419 SMART WD40_4 265 304 IPR001680 GO:0005515
Bva11g01086 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 215 - -
Bva11g01086 419 SUPERFAMILY WD40 repeat-like 59 414 IPR036322 GO:0005515
Bva11g01086 419 MobiDBLite consensus disorder prediction 20 53 - -
Bva11g01086 419 Gene3D - 48 174 IPR015943 GO:0005515
Bva11g01086 419 PANTHER VEGETATIVE INCOMPATIBILITY PROTEIN HET-E-1-LIKE ISOFORM X1 1 418 - -
Bva11g01086 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 95 IPR001680 GO:0005515
Bva11g01086 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 352 IPR001680 GO:0005515
Bva11g01086 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
Bva11g01086 419 CDD WD40 61 413 - -
Bva11g01086 419 Gene3D - 175 417 IPR015943 GO:0005515
Bva11g01086 419 Pfam WD domain, G-beta repeat 319 352 IPR001680 GO:0005515
Bva11g01086 419 Pfam WD domain, G-beta repeat 221 258 IPR001680 GO:0005515
Bva11g01086 419 Pfam WD domain, G-beta repeat 362 413 IPR001680 GO:0005515
Bva11g01086 419 Pfam WD domain, G-beta repeat 185 215 IPR001680 GO:0005515
Bva11g01086 419 Pfam WD domain, G-beta repeat 270 303 IPR001680 GO:0005515
Bva11g01086 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 304 IPR001680 GO:0005515
Bva11g01086 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Bva11g01086 419 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 418 IPR045182 -
Bva11g01086 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 267 IPR001680 GO:0005515
Bva11g01086 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 263 - -
Bva11g01086 419 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01086 Bva-Chr11 12234185 12235444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01086 203 413 Acyl Lipid Metabolism Gene Families AT3G18860 25.472 5.50e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01086 - - jre:108984971 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01086 11 12234185 12235444 Bva06g01308 06 9872476 9874038 BWGD
Bva11g01086 11 12234185 12235444 Bva11g01086 11 12234185 12235444 ECH