Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00400 ATGGAATACCATCGATCTTATAGTGACTCAGGCTCTTCGTCCCACTCTAACCACCAAACACCACTAATTTCTCTGACTTCACAACGCAGCCTTGCATCACTTCCTTCCCTTAACTTACAATCTCATAACCAGCTAGTAAACCATCCTTCCAACGCCTATCACCACTGCCTCACAACTCTCAAAGGCCACACGTCCTACATATCCTCTCTAACCCTTTCTGGGAAGTTTCTCTATACAGGTTCATCCGACAGAGAAATCAGATCCTGGAATCGTACCCCTTTTCACTCTGAATTCGATTCTGAACATTCAATCGCAAACATGGTAGTTGCTGGAAAGGGTGCAGTGAAGTCCCTAGTAGTTCAATCTGATAAGCTTTTTAGTGCTCACCAAGATCACAAAATCAGGGTATGGAAGATCAGCAACTACGAATCTCACCAGCAGAAGTACACCCGTGTAGCCACCCTTCCAACATTTGGTGACCGTGCCTCAAAGGTTCTGATCCCTAAGAACCATGTGCAGATCAGAAGGCACAAAAAATGCACCTGGGTTCATCACGTTGACACAGTTTCTGCTCTGGCCTTGTCCAGAGACGAGAGCTTGCTCTATTCAGTTTCATGGGATAGGACAATCAAAATTTGGCGAACCAGGGATTTCACCTGTTTAGAATCCTTAAGTAACGCTCATGGTGATGCCATAAACGCAGTTACACTTTCTGATGATGGGTATGTTTACACTGGATCAGCAGACAAGAGAATTAAGGTATGGAAGAAAGGCGAAGGAGATAAGAAACATTCTCTGGTTGACACATTGGAGAAACACAATTCGGGGATAAATGCGTTGGCTATCAGCAGTGACGGGTCTCTGTTATATTCGGGTGCATGCGACAGATCCATATTGGTTTGGGCGAAGAATGAAGATGGCAAAATGATAGTGATGGGCGCGCTTAGGGGGCACACCAAGTCCATACTGTGCTTGGCCCTGGTCTCTGATTTGGTTTGTAGTGGCTCTGCGGATAAAACAATTAGAGTCTGGAGAGGTGTTCATACAGAGTATTCTTGTTTGGCAGTTTTGAAAGGGCACAGGGGTCCGATTAAGTGCCTAACTGCAATGGTTGATCGTTATAATCCCCCGGAAGAATCTTTTCTAGTCTACAGTGGCAGTTTGGACTGCGACATTAAGGTATGGCAAATTTATGTTCCAACTCACTA 1208 0.4503 MEYHRSYSDSGSSSHSNHQTPLISLTSQRSLASLPSLNLQSHNQLVNHPSNAYHHCLTTLKGHTSYISSLTLSGKFLYTGSSDREIRSWNRTPFHSEFDSEHSIANMVVAGKGAVKSLVVQSDKLFSAHQDHKIRVWKISNYESHQQKYTRVATLPTFGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSRDESLLYSVSWDRTIKIWRTRDFTCLESLSNAHGDAINAVTLSDDGYVYTGSADKRIKVWKKGEGDKKHSLVDTLEKHNSGINALAISSDGSLLYSGACDRSILVWAKNEDGKMIVMGALRGHTKSILCLALVSDLVCSGSADKTIRVWRGVHTEYSCLAVLKGHRGPIKCLTAMVDRYNPPEESFLVYSGSLDCDIKVWQIYVPTH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00400 402 CDD WD40 56 396 - -
Bva05g00400 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 90 - -
Bva05g00400 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 344 - -
Bva05g00400 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 223 IPR001680 GO:0005515
Bva05g00400 402 Gene3D - 171 260 IPR015943 GO:0005515
Bva05g00400 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 265 IPR001680 GO:0005515
Bva05g00400 402 SUPERFAMILY WD40 repeat-like 55 397 IPR036322 GO:0005515
Bva05g00400 402 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 400 IPR045182 -
Bva05g00400 402 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 10 400 - -
Bva05g00400 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 344 IPR001680 GO:0005515
Bva05g00400 402 Pfam WD domain, G-beta repeat 219 256 IPR001680 GO:0005515
Bva05g00400 402 Pfam WD domain, G-beta repeat 56 90 IPR001680 GO:0005515
Bva05g00400 402 Pfam WD domain, G-beta repeat 267 301 IPR001680 GO:0005515
Bva05g00400 402 Pfam WD domain, G-beta repeat 183 213 IPR001680 GO:0005515
Bva05g00400 402 Pfam WD domain, G-beta repeat 352 395 IPR001680 GO:0005515
Bva05g00400 402 Pfam WD domain, G-beta repeat 314 344 IPR001680 GO:0005515
Bva05g00400 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 213 - -
Bva05g00400 402 MobiDBLite consensus disorder prediction 1 21 - -
Bva05g00400 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 90 IPR001680 GO:0005515
Bva05g00400 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 301 - -
Bva05g00400 402 Gene3D - 261 401 IPR015943 GO:0005515
Bva05g00400 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Bva05g00400 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 301 IPR001680 GO:0005515
Bva05g00400 402 Gene3D - 44 167 IPR015943 GO:0005515
Bva05g00400 402 SMART WD40_4 175 214 IPR001680 GO:0005515
Bva05g00400 402 SMART WD40_4 217 256 IPR001680 GO:0005515
Bva05g00400 402 SMART WD40_4 53 90 IPR001680 GO:0005515
Bva05g00400 402 SMART WD40_4 350 396 IPR001680 GO:0005515
Bva05g00400 402 SMART WD40_4 308 345 IPR001680 GO:0005515
Bva05g00400 402 SMART WD40_4 100 138 IPR001680 GO:0005515
Bva05g00400 402 SMART WD40_4 263 302 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00400 Bva-Chr5 1983571 1984779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00400 175 397 Miscellaneous Gene Families AT5G08390 27.313 1.33e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00400 - - gmx:100815608 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01308 06 9872476 9874038 Bva05g00400 05 1983571 1984779 ECH
Bva05g00400 05 1983571 1984779 Bva05g00400 05 1983571 1984779 ECH