Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01217 ATGGTCATGGTCTTTGGAGAGATCACTACCAAAGCCAATGTAGACTATGAGAAAATTGTGCGTGACACATGCAGGAAGATTGGCTTTGTTTCAGATGACGTTGGTCTTGACGCAGACCATTGCAAGGTCCTTGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAGGGTGTGCATGGTCATCTCACCAAGAGACCTGAGGAAATTGGTGCTGGAGATCAGGGTCACATGTTTGGCTATGCCACCGACGAGACCCCTGAATTGATGCCCTTGAGCCATGTTCTTGCAACCAAGCTTGGTGCTAAACTAACTGAAGTGCGCAAGAATGGCACCTGCCCTTGGTTGAGGCCCGATGGCAAGACCCAAGTCACTGTTGAGTACGTCAATGAAAAGGGTGCCATGGTTCCCATTCGTGTACACACTGTTCTTATTTCCACCCAGCACGACGAGACTGTCACAAACGATGAAATTGCAGCTGATCTTAAGGAGCATGTTATCAAGCCTGTGATCCCAGAGAAGTACCTCGATGAGAAAACCATTTTCCACTTGAACCCCTCTGGCCGTTTTGTCATTGGTGGCCCTCACGGTGATGCTGGTCTCACTGGCCGTAAGATCATCATTGACACCTACGGAGGATGGGGTGCTCACGGTGGTGGTGCCTTCTCCGGCAAGGACCCAACTAAGGTTGACAGGAGTGGAGCTTACATTGTGAGGCAAGCTGCCAAGAGCATTGTTGCCAGTGGACTTGCCAGGAGGTGCATTGTGCAAGTCTCTTACGCCATTGGTGTGCCGGAGCCTTTGTCTGTGTTTGTTGACTCCTACGGCACTGGAAAGATCCCAGACAAGGAGATCCTTAAGATTGTGAAGGAGAGCTTTGATTTCAGACCTGGCATGATCTCAATTAACCTTGATCTCAAGAGGGGTGGCAACAACAGGTTCTTGAAGACTGCTGCCTACGGACACTTTGGCAGAGATGACCCAGATTTCACATGGGAGGTGGTGAAGCCCCTTAAGTGGGAGAAGGCTTA 1028 0.5 MVMVFGEITTKANVDYEKIVRDTCRKIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYVNEKGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01217 342 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 4 1 342 - -
Bva05g01217 342 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 342 IPR002133 GO:0004478|GO:0005524|GO:0006556
Bva05g01217 342 Gene3D - 91 193 - -
Bva05g01217 342 ProSitePatterns S-adenosylmethionine synthase signature 2. 217 225 IPR022631 GO:0004478|GO:0006556
Bva05g01217 342 ProSitePatterns S-adenosylmethionine synthase signature 1. 70 80 IPR022631 GO:0004478|GO:0006556
Bva05g01217 342 Gene3D - 1 230 - -
Bva05g01217 342 Pfam S-adenosylmethionine synthetase, C-terminal domain 191 332 IPR022630 GO:0004478|GO:0006556
Bva05g01217 342 SUPERFAMILY S-adenosylmethionine synthetase 66 190 IPR022636 GO:0004478|GO:0006556
Bva05g01217 342 SUPERFAMILY S-adenosylmethionine synthetase 191 339 IPR022636 GO:0004478|GO:0006556
Bva05g01217 342 SUPERFAMILY S-adenosylmethionine synthetase 1 60 IPR022636 GO:0004478|GO:0006556
Bva05g01217 342 Gene3D - 68 332 - -
Bva05g01217 342 TIGRFAM metK: methionine adenosyltransferase 1 337 IPR002133 GO:0004478|GO:0005524|GO:0006556
Bva05g01217 342 CDD S-AdoMet_synt 1 335 - -
Bva05g01217 342 Pfam S-adenosylmethionine synthetase, N-terminal domain 1 52 IPR022628 GO:0004478|GO:0006556
Bva05g01217 342 Pfam S-adenosylmethionine synthetase, central domain 68 189 IPR022629 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01217 Bva-Chr5 6347736 6350061 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01217 K00789 - qsu:111997747 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01217 05 6347736 6350061 Bva05g01217 05 6347736 6350061 ECH
Bva05g01217 05 6347736 6350061 Bva13g03203 13 22369408 22371594 ECH
Bva05g01217 05 6347736 6350061 Bva04g03209 04 26127808 26130019 ECH
Bva05g01217 05 6347736 6350061 Bva13g03120 13 21941923 21944527 ECH