Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03209 ATGGATACCTTCCTGTTCACTTCTGAGTCAGTGAATGAGGGCCATCCTGACAAGCTCTGTGATCAGATTTCAGATGCAGTGCTTGATGCCTGCCTGGAACAAGATCCCGAAAGCAAGGTTGCCTGTGAGACCTGCACCAAGACTAACATGGTCATGGTGTTTGGAGAGATCACAACAAAGGGCAATATAGACTATGAGAAGATTGTACGTGAAACATGCCGTAACATAGGGTTTGTTTCGAATGATGTTGGCCTTGATGCTGACAATTGCAAGGTGTTGGCCTGCATCGAGCAGCAAAGCCCTGATATTGCCCAGGGAGTCCACGGCCATCTCACCAAGCGACCTGAAGATATAGGTGCTGGTGATCAGGGTCACATGTTTGGCTATGCCACAGATGAAACTCCTGAGCTAATGCCTCTCAGCCATGTCCTTGCGACCAAGCTTGGTGCTCGCCTCACAGAAGTGCGCAAGAATGGGACATGTCCTTGGTTGAGACCTGATGGAAAAACCCAAGTCACAGTGGAATATTATAATGATCGTGGTGCTATGGTCCCAGTCCGCGTTCACACTGTTCTCATTTCCACTCAGCACGATGAAACTGTCACTAACGATGAGATTGCTGCTGACCTGAAAGAGCATGTTATTAAGCCTGTTATACCTGAGAAATACTTGGATGAAAAAACCATCTTCCATCTCAATCCATCTGGCCGTTTTGTCATTGGTGGACCACATGGTGATGCAGGTCTTACCGGGCGCAAAATCATTATTGACACTTATGGCGGTTGGGGAGCCCATGGTGGTGGTGCTTTCTCTGGGAAAGACCCTACCAAGGTAGACAGAAGTGGAGCTTATATTGCTAGGCAGGCTGCAAAGAGTATTGTGGCCAATGGACTTGCTAGAAGGTGCATCGTGCAAATCTCGTATGCAATTGGTGTTCCTGAGCCCTTATCAGTGTTTGTTGACACTTACGGCACTGGAAATATTCCAGACAAGGAGATTCTCAAGATTGTGAAGGAGAACTTCGATTTTAGGCCGGGAATGATGTCCATCAATTTGGATCTTAAGAGGGGTGGAAATGGTAGGTTCTTGAAAACTGCTGCTTATGGCCACTTCGGCAGAGATGACCCGGACTTCACATGGGAGGTCGTGAAGCCTCTCAAGTGGGAGAAGCCCCAAGAGTA 1181 0.4793 MDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKGNIDYEKIVRETCRNIGFVSNDVGLDADNCKVLACIEQQSPDIAQGVHGHLTKRPEDIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDRGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVANGLARRCIVQISYAIGVPEPLSVFVDTYGTGNIPDKEILKIVKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03209 393 CDD S-AdoMet_synt 5 384 - -
Bva04g03209 393 SUPERFAMILY S-adenosylmethionine synthetase 115 239 IPR022636 GO:0004478|GO:0006556
Bva04g03209 393 Pfam S-adenosylmethionine synthetase, C-terminal domain 240 381 IPR022630 GO:0004478|GO:0006556
Bva04g03209 393 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478|GO:0006556
Bva04g03209 393 ProSitePatterns S-adenosylmethionine synthase signature 2. 266 274 IPR022631 GO:0004478|GO:0006556
Bva04g03209 393 PIRSF MAT 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Bva04g03209 393 Gene3D - 4 243 - -
Bva04g03209 393 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
Bva04g03209 393 TIGRFAM metK: methionine adenosyltransferase 5 386 IPR002133 GO:0004478|GO:0005524|GO:0006556
Bva04g03209 393 SUPERFAMILY S-adenosylmethionine synthetase 240 389 IPR022636 GO:0004478|GO:0006556
Bva04g03209 393 Gene3D - 11 280 - -
Bva04g03209 393 Pfam S-adenosylmethionine synthetase, central domain 117 238 IPR022629 GO:0004478|GO:0006556
Bva04g03209 393 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478|GO:0006556
Bva04g03209 393 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478|GO:0006556
Bva04g03209 393 Gene3D - 117 381 - -
Bva04g03209 393 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 1 393 - -
Bva04g03209 393 Hamap S-adenosylmethionine synthase [metK]. 2 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03209 Bva-Chr4 26127808 26130019 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03209 K00789 - pvy:116110364 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03203 13 22369408 22371594 Bva04g03209 04 26127808 26130019 ECH
Bva05g01217 05 6347736 6350061 Bva04g03209 04 26127808 26130019 ECH
Bva04g03209 04 26127808 26130019 Bva04g03209 04 26127808 26130019 ECH