Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1948 ATGGAAGCTCGACGGCGACCTATTAACCCCGTCCGTTCAGGCTCGGCCGGCGAACCCCTCAAGCCTCAGAAGCTTTCCCATTATAAATCCTCAGCTTCCGATGCGCAGGCTCTGCCATTGATCCCGCTTTACCTCACCAACGGCATCGTCTTCTGTCTTTTCTTCTCCGTCGCTTACTTTCTCCTTCACAGGTGGCGCGAGAAGATACGCACCTCCACTCCCCTCCATGTCGTCACCCTCTCCGAGATTGCAGCCATTCTGTCCTTTATCGCCTCCGTCATCTACCTTCTGGGTTTCTTCGGCATTGGCTTTGTCCACCCAATTAGCTCTCGCGCTTCCTCCGATGACGAGCTCGAATTGGACGACGACGCCGTCATTGCCAAAGACGATGGTCGCAATCCTGGCCCTTGCCCAGCTGGCGTCATTGATTGCTCTGCCGTCTCTTCTCCCCCGCCGCAACAGACCCAGACGCCGCATAGGGTGGTGATTCCTCCCAAAATCGTCGACAACGCGCCGATTCCTCTGTCTCAGGACGACGAAGAAATCGTGAAGTCAGTGGTATCTGGCTCGATTCCTTCGTACTCTCTCGAATCGAAGCTGGATGATTGTCGTCGAGCGGCGGCGATTCGAAGAGAGGTGGTGCAGAGAACCACGGGAAGGTCGCTGGAGGGTTTGCCCATAGAAGGGTTTGATTACGAAGCAATATTGGGACAGTGCTGTGAGATGCCCATTGGGTACGTGCAGATCCCTGTGGGGGTGGCCGGTCCGTTGTTGCTGGATGGGGTTGACTACACAGTGCCTATGGCTACCACAGAGGGCTGTCTTGTTGCTAGCACAAACAGAGGATGTAAAGCTATTTACGTTTCAGGTGGAGCTTCTTCTAGTTTGCTAAGGGATGGGATGACCAGAGCTCCTGTGGTGAGGTTCTCCACTGTCAAGAGAGCTGCTGAACTGAAATTCTTCTTGGAGGATCCTCTCAATTTTGACTCGCTCGCTATCGTTTTCAACAAGTCAAGCAGATTTGCCAGGTTACAGAGTATTCAGTGTGCAGTGGCAGGCAAGAACATATATATCAGATTCCGTTGCAGCACCGGGGACGCCATGGGGATGAACATGGTATCCAAAGGCGTTCAAAATGTCCTTGATTTTCTTCAGGATGACTTCCCAGACATGGATGTTATTGGCATCTCTGGAAATTTCTGTTCAGACAAGAAAGCATCAGCTGTGAACTGGATTGAAGGGCGTGGCAAATCTGTTGTATGCGAGGCTATAATCAAGGAAGAGGTGGTGAAGAAAGTATTGAAGACTAACGTGGAGGCCCTGGTGGAGCTTAACATGCTTAAAAACCTCACTGGCTCAGCCATGGCTGGTGCTCTTGGGGGCTTCAATGCCCATGCAAGCAATATTGTCTCTGCTATCTACATAGCCACTGGTCAGGACCCTGCCCAGAATGTAGAGAGTTCTCACTGCATCACCATGATGGAAGCCGTCAACAACGGCAAGGACCTCCACGTCTCGGTCACCATGCCTTCCATTGAGGTGGGTACAGTAGGCGGAGGTACTCAGCTCGCATCTCAGTCGGCTTGTCTGAATTTACTTGGAGTCAAGGGAGCCAGCAAAGAGTCTCCTGGTTCGAATTCTCGGCTTCTGGCTTCCATAGTTGCCGGTGCAGTCCTTGCTGGGGAGCTTTCACTCTTGTCTGCCATTGCAGCAGGACAGCTTGTTAAGAGCCACATGAAATACAACAGATCTAGCAGGGATATCACCAAAGTTGTCTCTTGA 1782 0.5196 MEARRRPINPVRSGSAGEPLKPQKLSHYKSSASDAQALPLIPLYLTNGIVFCLFFSVAYFLLHRWREKIRTSTPLHVVTLSEIAAILSFIASVIYLLGFFGIGFVHPISSRASSDDELELDDDAVIAKDDGRNPGPCPAGVIDCSAVSSPPPQQTQTPHRVVIPPKIVDNAPIPLSQDDEEIVKSVVSGSIPSYSLESKLDDCRRAAAIRREVVQRTTGRSLEGLPIEGFDYEAILGQCCEMPIGYVQIPVGVAGPLLLDGVDYTVPMATTEGCLVASTNRGCKAIYVSGGASSSLLRDGMTRAPVVRFSTVKRAAELKFFLEDPLNFDSLAIVFNKSSRFARLQSIQCAVAGKNIYIRFRCSTGDAMGMNMVSKGVQNVLDFLQDDFPDMDVIGISGNFCSDKKASAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNNGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLASIVAGAVLAGELSLLSAIAAGQLVKSHMKYNRSSRDITKVVS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1948 593 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 175 249 - -
Bisa11g1948 593 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 300 416 - -
Bisa11g1948 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 397 422 IPR002202 GO:0004420|GO:0015936
Bisa11g1948 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 266 286 IPR002202 GO:0004420|GO:0015936
Bisa11g1948 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 357 375 IPR002202 GO:0004420|GO:0015936
Bisa11g1948 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 502 523 IPR002202 GO:0004420|GO:0015936
Bisa11g1948 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 239 260 IPR002202 GO:0004420|GO:0015936
Bisa11g1948 593 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 448 474 IPR002202 GO:0004420|GO:0015936
Bisa11g1948 593 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 179 583 IPR002202 GO:0004420|GO:0015936
Bisa11g1948 593 Pfam Hydroxymethylglutaryl-coenzyme A reductase 207 583 IPR002202 GO:0004420|GO:0015936
Bisa11g1948 593 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 173 572 IPR009029 GO:0015936|GO:0016616
Bisa11g1948 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 568 581 IPR023076 GO:0004420
Bisa11g1948 593 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 179 583 IPR004554 GO:0004420|GO:0005515|GO:0008299
Bisa11g1948 593 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 403 578 - -
Bisa11g1948 593 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 300 416 IPR009023 -
Bisa11g1948 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 514 521 IPR023076 GO:0004420
Bisa11g1948 593 Gene3D - 175 249 IPR023282 GO:0004420
Bisa11g1948 593 Gene3D - 300 416 IPR009023 -
Bisa11g1948 593 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 359 373 IPR023076 GO:0004420
Bisa11g1948 593 MobiDBLite consensus disorder prediction 1 23 - -
Bisa11g1948 593 Gene3D - 250 570 IPR023074 GO:0004420
Bisa11g1948 593 CDD HMG-CoA_reductase_classI 180 583 IPR004554 GO:0004420|GO:0005515|GO:0008299
Bisa11g1948 593 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 18 586 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1948 Bisa-ChrBisa11 41882424 41885616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1948 1 589 Lipid Metabolism Gene Families AT1G76490 68.439 0.0 830
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1948 11 41882424 41885616 Bisa01g3001 01 64565462 64567625 CCT
Bisa05g2241 05 50934698 50937967 Bisa11g1948 11 41882424 41885616 ECH
Bisa11g1948 11 41882424 41885616 Bisa11g1948 11 41882424 41885616 ECH