Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3001 ATGGACGTTCGCCGACGACACCTCTGTCTCCGACCAAGCTCTGTCGGCGAACCTCTCAACCCCCGCAAGCACGCGAAAGCTTCTTCCGCCTCAGATGGACCCCAACAAGCACCGCCATTGCTGCCTCTTTACCTTACCAACCTCGTCGTCTTCACCATTTTCTTCTCCGTCGCTTACTTCCTCCTCCATCGATGGCGTGAGAAGATCCGTACATCCACGCCTCTGCATGTCATCACGCTGTCGGAGATTGCAGCCATGGTGTCCCTCCTCGCCTCTGTCATCTACCTTCTAGGTTTCTTCGGCATTGGATTCTTCCACCCAATCACTTCTCGCGCTTCATCTTCTGACGATGAAGTTGACGACCTCGAATTGGAACACGACCATGACATCACCCTCACTGCTCCTAGCCCCGCTGGTGTCTTTGATTGTTCTGTCATCTCTGCTCCTCCGAAGAAAATCTTCGACAACATTCCCTTCTCTTTGTCCAAGGAGGACGAAGAAATCGTCGAGTCAGTGATATCTGGGACGATTCCTTCGTACTCGCTGGAATTGAAGCTGAGGGATTGTGTAAGAGCAGCTGCGATTCGAAGAGAATCGGTGCAGAGAATGACGGGAAGGTCACTGCAGGGATTGCCCATTGAAGGATTCGATTACGGGTCGATATTGGGACAGTGTTGCGAGATGCCGATTGGGTTCATTCAGATCCCTGTGGGGGTTGCAGGGCCCTTGTTATTAGATGGCAATGAGTACACAGTGCCTATGGCCACCACTGAAGGTTGCCTTGTGGCTAGCACCAACAGAGGTTGTAAGGCCATTTATGCTTCGGGTGGAGCTTCTTCTGTGTTGCTCAGAGATGGCATGACCAGGGCTCCTGTTGTTAGGTTATCATCTGCCAAAAGGGCTGCTCAGCTGAAGTTCTTCTTGGAGGACCCTCTCAATTTTGAGACTCTTTCTGTCGTTTTCAACAAGTCAAGTAGATTTGCCAGGTTACAGAGTATTCAGTGTGCAATAGCGGGCAAGAACTTATACATTAGATTCTGTTGCAGCACTGGAGACGCCATGGGGATGAACATGGTGTCGAAAGGTGTCCAAAATGTCCTTGATTTCCTTCAAAACGAGTTCCCTGACATGGATGTAATTGGCATCTCTGGAAATTTCTGTTCGGACAAAAAGGCAGCAGCTGTAAACTGGATTGAAGGGCGTGGCAAGTCTGTGGTCTGCGAGGCTATAATCAAGGAGGAGGTGATAAAGAAAGTTCTGAAGACTAGCGTGGAAACCTTGGTGGAGCTAAACATGCTTAAAAATCTTACCGGGTCAGCTATGGCCGGTGCTCTTGGGGGTTTCAATGCCCATGCTAGTAATATTGTCTCTGCTATATACCTGGCCACCGGTCAGGATCCTGCTCAGAATGTGGAGAGTTCTCAGTGCATCACTATGATGGAAGCAGTGAATGATGGCAAGGACCTTCACATCTCTGTCTCCATGCCTTCTGTTGAGGTATAA 1503 0.4977 MDVRRRHLCLRPSSVGEPLNPRKHAKASSASDGPQQAPPLLPLYLTNLVVFTIFFSVAYFLLHRWREKIRTSTPLHVITLSEIAAMVSLLASVIYLLGFFGIGFFHPITSRASSSDDEVDDLELEHDHDITLTAPSPAGVFDCSVISAPPKKIFDNIPFSLSKEDEEIVESVISGTIPSYSLELKLRDCVRAAAIRRESVQRMTGRSLQGLPIEGFDYGSILGQCCEMPIGFIQIPVGVAGPLLLDGNEYTVPMATTEGCLVASTNRGCKAIYASGGASSVLLRDGMTRAPVVRLSSAKRAAQLKFFLEDPLNFETLSVVFNKSSRFARLQSIQCAIAGKNLYIRFCCSTGDAMGMNMVSKGVQNVLDFLQNEFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAIIKEEVIKKVLKTSVETLVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYLATGQDPAQNVESSQCITMMEAVNDGKDLHISVSMPSVEV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3001 500 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 286 402 - -
Bisa01g3001 500 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 383 408 IPR002202 GO:0004420|GO:0015936
Bisa01g3001 500 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 434 460 IPR002202 GO:0004420|GO:0015936
Bisa01g3001 500 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 225 246 IPR002202 GO:0004420|GO:0015936
Bisa01g3001 500 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 343 361 IPR002202 GO:0004420|GO:0015936
Bisa01g3001 500 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 488 500 IPR002202 GO:0004420|GO:0015936
Bisa01g3001 500 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 252 272 IPR002202 GO:0004420|GO:0015936
Bisa01g3001 500 MobiDBLite consensus disorder prediction 12 35 - -
Bisa01g3001 500 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 165 500 IPR002202 GO:0004420|GO:0015936
Bisa01g3001 500 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 161 500 IPR009029 GO:0015936|GO:0016616
Bisa01g3001 500 Pfam Hydroxymethylglutaryl-coenzyme A reductase 193 500 IPR002202 GO:0004420|GO:0015936
Bisa01g3001 500 CDD HMG-CoA_reductase_classI 166 500 IPR004554 GO:0004420|GO:0005515|GO:0008299
Bisa01g3001 500 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 345 359 IPR023076 GO:0004420
Bisa01g3001 500 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 161 235 - -
Bisa01g3001 500 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 286 402 IPR009023 -
Bisa01g3001 500 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 15 500 IPR002202 GO:0004420|GO:0015936
Bisa01g3001 500 Gene3D - 286 402 IPR009023 -
Bisa01g3001 500 Gene3D - 236 500 IPR023074 GO:0004420
Bisa01g3001 500 Gene3D - 161 235 IPR023282 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3001 Bisa-ChrBisa01 64565462 64567625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3001 26 500 Lipid Metabolism Gene Families AT1G76490 69.328 0.0 696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1948 11 41882424 41885616 Bisa01g3001 01 64565462 64567625 CCT
Bisa01g3001 01 64565462 64567625 Bisa01g3001 01 64565462 64567625 ECH