Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g01320 ATGAGGCACTCTCATTATATCTTAGCATTTTTCTTCACTTTAATTCTTACAACTCAAGCAAGACACCATCACCATACAAAACACAAACACTCTTCACATTCTAATAATAATGACAATAATAGTAATAATCAATCATATCCTCCTTCTCCTTCTCCTTCTTCCGGAATTTCAGTGCCTCCTGTGGCTGCACCCGGTGGTTATGACAATGAAGCTCCTAGTCCTAGTCCCTCTGATGATGATGGCTCCGAAATCTTCGATGTTCGAACATTTGGGGCCATTGGAGATGGTATAGCTGATGATACAAATTCCTTCAAGATGGCGTGGGACAGTGCTTGCCAAAGTGAATCAGCAATTAACGTTGTACTTGTTCCTCGCGGTTTCTCGTTCATGGTCCAGTCTACAATCTTCACTGGTCCCTGTCAAGGTGGCTTAGTGTTAAAGGTTGATGGCACTCTCATGCCACCAGATGGACCTGAATCTTGGCCAAACAACACAAGTAGGCGTCAATGGCTTGTCTTTTACAGAATCAATAATATGTCACTACAAGGAAGTGGTGTTATTGATGGCAGAGGACAAAATTGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTAATGGGACTACACTTCCAGGACCTTGTGATAGCCCAGTTGCATTAAGGTTTTTCATGAGTTCAAACTTGAGTGTGCAAGGACTTAGAATCAAGAACAGTCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAGCGTTCGAGTAGATTCAATCTTCATAACATCTCCAGCACTAAGTCCCAACACCGATGGAATACACATAGAAAACACAAATGACGTAAGGATATACAATTCCGTCATTTCCAACGGTGATGACTGTGTGTCCATTGGAACGGGTTGCTATGATGTTGAGATAAAGAACATTACATGTGGTCCCAGCCACGGAATTAGCATTGGTAGTTTGGGAAACCACAACTCAAGAGCCTGCGTCTCAAACATTACAGTAAGAGAGTCAACGATCAAAGGGTCAGACAATGGAGTAAGAATAAAAACATGGCAAGGAGGATCAGGATCAGTATCAAAAGTAACATTCAGCAAGATTCACATGGAGAGTGTACGGAACCCAATAATAATCGACCAATTCTATTGCCTATCGAAAGATTGCAGCAACAAAAGCTCGGCAGTATTTGTATCAGACATAGTATACTCAAACATAAAGGGGACATATGATATAAGGCACCCACCCATGCGTTTCGCTTGCAGTGACTCTGTGCCTTGCACTAACTTAACTCTTTCTGATATTGAGCTTCTTCCTGCACAGGGTGATCTTTTTAATGACCCTTTTTGTTGGAATGCTTATGGCAATTCGGAGACACTAACTATTCCTCCTGTTTCTTGCTTGATTGAGGGTCTTCCTCAGTCTCTTCCAGGGAATGATTTATCTCGTTGCTGA 1446 0.4232 MRHSHYILAFFFTLILTTQARHHHHTKHKHSSHSNNNDNNSNNQSYPPSPSPSSGISVPPVAAPGGYDNEAPSPSPSDDDGSEIFDVRTFGAIGDGIADDTNSFKMAWDSACQSESAINVVLVPRGFSFMVQSTIFTGPCQGGLVLKVDGTLMPPDGPESWPNNTSRRQWLVFYRINNMSLQGSGVIDGRGQNWWDLPCKPHKGPNGTTLPGPCDSPVALRFFMSSNLSVQGLRIKNSPQFHFRFDGCKSVRVDSIFITSPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGTGCYDVEIKNITCGPSHGISIGSLGNHNSRACVSNITVRESTIKGSDNGVRIKTWQGGSGSVSKVTFSKIHMESVRNPIIIDQFYCLSKDCSNKSSAVFVSDIVYSNIKGTYDIRHPPMRFACSDSVPCTNLTLSDIELLPAQGDLFNDPFCWNAYGNSETLTIPPVSCLIEGLPQSLPGNDLSRC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g01320 481 MobiDBLite consensus disorder prediction 35 51 - -
Arst9g01320 481 SMART pbh1 328 349 IPR006626 -
Arst9g01320 481 SMART pbh1 298 318 IPR006626 -
Arst9g01320 481 SMART pbh1 275 296 IPR006626 -
Arst9g01320 481 SMART pbh1 357 378 IPR006626 -
Arst9g01320 481 SMART pbh1 225 274 IPR006626 -
Arst9g01320 481 PANTHER - 84 453 - -
Arst9g01320 481 FunFam Polygalacturonase At1g48100 family 73 468 - -
Arst9g01320 481 MobiDBLite consensus disorder prediction 23 84 - -
Arst9g01320 481 Gene3D - 69 466 IPR012334 -
Arst9g01320 481 Pfam Glycosyl hydrolases family 28 116 434 IPR000743 GO:0004650|GO:0005975
Arst9g01320 481 ProSitePatterns Polygalacturonase active site. 305 318 IPR000743 GO:0004650|GO:0005975
Arst9g01320 481 SUPERFAMILY Pectin lyase-like 83 467 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g01320 Arst-Chr9 18361936 18366515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g01320 79 481 Glycoside Hydrolase AT1G02460 70.690 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g01320 - - gmx:100792285 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g01320 9 18361936 18366515 Arst9g01320 9 18361936 18366515 ECH
Arst6g00770 6 6844747 6847630 Arst9g01320 9 18361936 18366515 ECH
Arst4g01196 4 11168888 11173121 Arst9g01320 9 18361936 18366515 ECH
Arst6g00770 6 6844747 6847630 Arst9g01320 9 18361936 18366515 PCT