Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00770 ATGTTGAGAATGAAGTATTGTCACATTTCAGCACTAGTGTTGTGCATGTTTCTCCTTTCCTTAATTCTTTCAATCCAAGCTAGACATCATTCCCATAAAAGACAGAGACATTCACATTCTCATAAATCATCTAGAACTTTTGATGTAACAAAATTTGGAGCCATTGGAGATGGAATAACAGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGTGAAAGTGAATCAGAATTTAATGTTATTATTGTTCCCAAAGGTTTCTCCTTCCTCATTCGGCCCACTATTTTCACTGGTCCTTGCCATGGTTACTTAGTATTGAAGGTGGATGGAACTATAATGCCACCAGATGGACCTGATTCTTGGCCAAAGAACAATACTAAGCGTCTATGGCTGGTGTTTTATAGAATCAATGGAATGTCACTTGAAGGAGGTGGTTTAATAGATGGAAGAGGAGATAAATGGTGGGAACTTCCTTGTAAGCCTCACAGGGGACCAAATGGAACAACTGCTCCTGGACCTTGTGATAGCCCAATGGCCATAAATTTTTTTATGGGTTCCAACTTGACTGTGCAAGAACTTAGGGTCAGGGACAGCCCCCAGATTCATTTAAGATTTGATGCATGCAGAAGTGTCCACATTGAATCTATCCACATAAAAGCTCCAAGACTAAGCCCCAACACTGATGGAATTCACATAGAAAACAGCACTGATGTCAAAATATATAATACTGTGATTTCTAATGGTGATGATTGTGTGTCCATTGGAACCGGTTGCTATGATGTTGATATAAAGAACATTACTTGTGGTCCTGGTCATGGAATCAGCATTGGTAGCTTGGGAAAGTACAACTCTAGAGCATGTGTTTCAAACATTAAGGTGAGAGACTCAGTTATTCAGATGACAGATAATGGAGTTAGGATCAAGACATGGCAAGGTGGATCAGGATATGTATCAGGAATAACATTCAGCAACATTCATATGTATAATGTTAGAAACCCCATGATAATAGACCAATTCTATTGCCTCAAAGAGGGTGAAGTGTGCAGAAACAAAACCTCTGCAGTGGTTGTATCAGACATTCTATACAGAAACATAAAGGGAACATATGATATAAGGAGCCCTCCTATGAGATTTGCATGCAGTGACAGTGTTCCATGCACCAACTTAACCCTCTCAGATATTGAGCTTCTTCCTGATCAAGGAGATATGGTTGTTGATCCTTTCTGTTGGAATGCTTATGGTGATCTCAGGACACAAACCATTCCACCAGTTTTTTGCTTGCTTGATGGATTTCCTCAGTCCATCTTGCACAATGACATAGCTCATTGCACGCGGTATTCATGA 1350 0.4007 MLRMKYCHISALVLCMFLLSLILSIQARHHSHKRQRHSHSHKSSRTFDVTKFGAIGDGITDDTESFKMAWDTACESESEFNVIIVPKGFSFLIRPTIFTGPCHGYLVLKVDGTIMPPDGPDSWPKNNTKRLWLVFYRINGMSLEGGGLIDGRGDKWWELPCKPHRGPNGTTAPGPCDSPMAINFFMGSNLTVQELRVRDSPQIHLRFDACRSVHIESIHIKAPRLSPNTDGIHIENSTDVKIYNTVISNGDDCVSIGTGCYDVDIKNITCGPGHGISIGSLGKYNSRACVSNIKVRDSVIQMTDNGVRIKTWQGGSGYVSGITFSNIHMYNVRNPMIIDQFYCLKEGEVCRNKTSAVVVSDILYRNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPDQGDMVVDPFCWNAYGDLRTQTIPPVFCLLDGFPQSILHNDIAHCTRYS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00770 449 ProSitePatterns Polygalacturonase active site. 267 280 IPR000743 GO:0004650|GO:0005975
Arst6g00770 449 FunFam Polygalacturonase At1g48100 family 35 432 - -
Arst6g00770 449 Pfam Glycosyl hydrolases family 28 80 398 IPR000743 GO:0004650|GO:0005975
Arst6g00770 449 PANTHER - 45 416 - -
Arst6g00770 449 SMART pbh1 319 340 IPR006626 -
Arst6g00770 449 SMART pbh1 210 236 IPR006626 -
Arst6g00770 449 SMART pbh1 290 311 IPR006626 -
Arst6g00770 449 SMART pbh1 237 258 IPR006626 -
Arst6g00770 449 SMART pbh1 260 280 IPR006626 -
Arst6g00770 449 SUPERFAMILY Pectin lyase-like 41 432 IPR011050 -
Arst6g00770 449 Gene3D - 30 428 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00770 Arst-Chr6 6844747 6847630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00770 47 445 Glycoside Hydrolase AT1G02460 65.920 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00770 - - lang:109331836 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00770 6 6844747 6847630 Arst6g00770 6 6844747 6847630 ECH
Arst6g00770 6 6844747 6847630 Arst9g01320 9 18361936 18366515 ECH
Arst4g01196 4 11168888 11173121 Arst6g00770 6 6844747 6847630 ECH
Arst6g00770 6 6844747 6847630 Arst9g01320 9 18361936 18366515 PCT