Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01196 ATGAGTGTGATTCATGGGGTTTTCATGTTATGGATTACTATGATTCTTCTTGTTTTGGTCCATAATTTGGAAAATGTGGAAGGAAGACATCATTCTCACAAGAAGGGTAAGAAAAATCAACATCCTTCACCACCTTATAATGCTCCTCCTACAGTGCCCTCTGATCCCGGAAATTCGCCGTCCGATTGCAACGTTTTCGACGTAAGATCGTTCGGTGCAGCCGGAGATGGTTGCTCTGATGATACAGGTGCATTCAGGGAAGCATGGAAAGCAGCATGTGAAGTGGAATCAGGGGTTGTTCTGGCTCCACAAGACTACATTTTCATGATCACCTCAACCATCTTTTCAGGTCCATGCAAACCAGGACTAGTGTTTCAAGTGGATGGAACTCTAATGGCACCAGATGGACCAGAAAACTGGCCTGAAGAAGATAAGCGCAATCAATGGCTTGTGTTCTACAAACTTGATCAAATGATTCTTAACGGGACAGGGATCTTACAAGGCAATGGTGAACAATGGTGGGATCTACCTTGCAAACCTCACAGGAGTCCAGAAGGAGAGCCTGTGTCAGGACCATGTGATAGCCCAGCAATGATAAGATTCTTCATGAGCTCAAATTTGGTGGTGGCTGGGCTGAAAATTCAGAACAGTCCTCAGTTCCATGTGAAATTTGATGGATGTGAAGGAGTGCTCATCAATGAAGTGTCCCTTTACTCACCTAAACTTAGCCCAAACACTGATGGGATCCACTTGGGAAACACAAGGGATGTTGGTATATATAACACCATCATAAGCAATGGTGATGATTGCATTTCAATTGGACCCGGTTGCTCAAATGTGGAAATAGACGGTGTAACTTGTGGTCCTAGCCATGGCATAAGCATTGGAAGCCTAGGTGTGCACAACTCGCAAGCATGTGTGTCAAACATAACAGTGATGAACACAAAGATAAGGGAATCAGACAATGGGATCAGGATCAAGACATGGCAAGGAGGAACAGGATCAGTGACAGGACTTAGATTTGAGAAGATAGAAATGGAGAATGTGAGAAACTGCATAATCATAGACCAATACTACTGCTTGTCAAAGGGGCAAGGATGTCTAAACCAAACCTCAGGTGTTCATGTGAATGACGTGTCATACAGGAACATAAAAGGAACCTATGATGTTAGAACCCCTCCAATACACTTTGCATGCAGTGACACAGTTGCTTGCACAAACATAACAATGTCCGATGTTGAACTCATGCCTCATGAGGGTCACTTGCTTGATGACCCTTTTTGTTGGAATGCTTATGGGGTTCAAGAAACCATGACTATTCCTCCCCTTGATTGCTTGAGACAAGGTCAACCTGACACACTCATTGAGCTCTCACAATATGAATGTAATTAA 1392 0.4361 MSVIHGVFMLWITMILLVLVHNLENVEGRHHSHKKGKKNQHPSPPYNAPPTVPSDPGNSPSDCNVFDVRSFGAAGDGCSDDTGAFREAWKAACEVESGVVLAPQDYIFMITSTIFSGPCKPGLVFQVDGTLMAPDGPENWPEEDKRNQWLVFYKLDQMILNGTGILQGNGEQWWDLPCKPHRSPEGEPVSGPCDSPAMIRFFMSSNLVVAGLKIQNSPQFHVKFDGCEGVLINEVSLYSPKLSPNTDGIHLGNTRDVGIYNTIISNGDDCISIGPGCSNVEIDGVTCGPSHGISIGSLGVHNSQACVSNITVMNTKIRESDNGIRIKTWQGGTGSVTGLRFEKIEMENVRNCIIIDQYYCLSKGQGCLNQTSGVHVNDVSYRNIKGTYDVRTPPIHFACSDTVACTNITMSDVELMPHEGHLLDDPFCWNAYGVQETMTIPPLDCLRQGQPDTLIELSQYECN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01196 463 Pfam Glycosyl hydrolases family 28 107 416 IPR000743 GO:0004650|GO:0005975
Arst4g01196 463 ProSitePatterns Polygalacturonase active site. 284 297 IPR000743 GO:0004650|GO:0005975
Arst4g01196 463 FunFam Polygalacturonase At1g48100 family 54 449 - -
Arst4g01196 463 SMART pbh1 307 328 IPR006626 -
Arst4g01196 463 SMART pbh1 277 297 IPR006626 -
Arst4g01196 463 SMART pbh1 227 253 IPR006626 -
Arst4g01196 463 SMART pbh1 254 275 IPR006626 -
Arst4g01196 463 SMART pbh1 336 357 IPR006626 -
Arst4g01196 463 MobiDBLite consensus disorder prediction 29 59 - -
Arst4g01196 463 PANTHER - 65 433 - -
Arst4g01196 463 Gene3D - 53 452 IPR012334 -
Arst4g01196 463 SUPERFAMILY Pectin lyase-like 63 461 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01196 Arst-Chr4 11168888 11173121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01196 1 451 Glycoside Hydrolase AT1G48100 68.376 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01196 - - gmx:100785528 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g01196 4 11168888 11173121 Arst4g01196 4 11168888 11173121 ECH
Arst4g01196 4 11168888 11173121 Arst6g00770 6 6844747 6847630 ECH
Arst4g01196 4 11168888 11173121 Arst9g01320 9 18361936 18366515 ECH