Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2223 ATGTCAATGAGTGAGCGGAAGACTACCGACCTAGAACAAGGATGGGATTTTATGCAGAAGGGAATCACAAAGCTCAAGAACATTCTAGAAGGCTTGCCTGAGCCCCAGTTCAGCTCTGAGGACTATATGATGCTTTATACGACCATATACAATATGTGCACTCAAAAGCCTCCTCATGACTATTCCCAGCAACTGTATGACAAGTACAGGGAATCATTTGAAGAGTACATCATATCAACGGTATTGCCTTCTTTGAGAGAGAAGCATGATGAATTTATGTTGAGAGAACTTGTGAAGAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGGTTCTTTCACTATTTGGATCGGTACTTTATTGCTCGGAGGTCACTTCCACCCCTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAATGGGAAAGTAAGAGATGCAGTCATTTCACTTATTGATCAAGAACGTGAGGGAGAGCAGATTGATAGAGCTTTATTAAAGAATGTATTAGACATATTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAGAATGATTTTGAAGCTGCCATGCTCAAAGATACTTCTGCATATTATTCTCGAAAGGCTTCAAATTGGATCCTGGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTGAAGCGGGAGAAAGATAGGGTTGCTCATTATTTGCACTCTAGTAGCGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGCTGTTATCTGTGTATGCAAACCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCTTTACTTAGAGATGACAAGGTGGAAGACTTGTCAAGGATGTTCAGGCTATTTTCTAAAATTCCTCGAGGCTTAGATCCTGTTTCCAGTATATTTAAGCAGCATGTTACCACTGAAGGTATGGCATTGGTGAAGCATGCTGAAGATGTAGCTAGCAACAAAAAGGCAGATAAAAAGGACATTGTTGGTCTGCAGGAGCAGGTTTTTGTTCGAAAGGTGATTGAGCTTCATGACAAGTACCTGGCATACGTGAATGATTGTTTCCAGAATCATACCCTTTTCCACAAGGCTCTTAAAGAGGCTTTTGAGGTCTTTTGCAACAAAGGTGTTGCTGGAAGTTCAAGTGCAGAACTGCTTGCTTCTTTCTGCGATAACATTCTTAAGAAAGGAGGAAGTGAGAAATTAAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTGGTCAAGCTGCTTGCCTATATTAGTGACAAAGACTTGTTTGCTGAATTCTATAGGAAGAAGCTTGCTCGAAGGCTTCTCTTTGACAAGAGTGCCAATGATGATCATGAGAGAAGTATTTTGACAAAATTGAAGCAACAGTGCGGTGGACAGTTTACCTCTAAAATGGAAGGAATGGTTACAGATTTGACACTGGCAAAGGAGAATCAAACTAGCTTTGAGGAGTATTTAAGCAATAATTCCAATGCAGACCCTGGGATAGACTTGACAGTTACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCTGCAGAAATGATTAGGTGTGTTGAAGTTTTCAAAGAATTTTATCAAACTAAAACGAAGCACAGAAAACTTACATGGATTTATTCCTTGGGTACCTGTAATATAAGTGGGAAATTTGAGCCAAAAACTGTGGAACTGATTGTTACAACCTACCAGATTCCTCTTCCTCCCGTGGATGAGAAGAAAAAAGTCATTGAGGATGTTGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGAAAAGTTTTGGGCTACCAACAGTTAGTCATGGAATGTGTTGAGCAGTTGGGTCGTATGTTTAAGCCTGACGTCAAGGCAATTAAAAAGCGGATTGAAGATTTGATTTCTCGAGACTACTTGGAAAGAGACAAAGATAATGCAAATTTGTTCAAGTACTTGGCTTGA 2016 0.3998 MSMSERKTTDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYIISTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTTEGMALVKHAEDVASNKKADKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLASFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNSNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMIRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTVELIVTTYQIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANLFKYLA* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2223 671 Gene3D Cullin Repeats 142 264 - -
Apr9g2223 671 PANTHER CULLIN 2 582 IPR045093 -
Apr9g2223 671 PANTHER CULLIN 582 670 IPR045093 -
Apr9g2223 671 Gene3D Cullin Repeats 267 389 - -
Apr9g2223 671 SUPERFAMILY Cullin repeat-like 11 385 IPR016159 -
Apr9g2223 671 Gene3D - 587 671 IPR036388 -
Apr9g2223 671 PANTHER CULLIN 3B 2 582 - -
Apr9g2223 671 PANTHER CULLIN 3B 582 670 - -
Apr9g2223 671 Gene3D Cullin Repeats 390 504 - -
Apr9g2223 671 ProSiteProfiles Cullin family profile. 389 583 IPR016158 -
Apr9g2223 671 SUPERFAMILY "Winged helix" DNA-binding domain 585 671 IPR036390 -
Apr9g2223 671 Pfam Cullin family 24 582 IPR001373 GO:0006511|GO:0031625
Apr9g2223 671 SMART cul_2 420 569 IPR016158 -
Apr9g2223 671 SMART Cullin_Nedd8_2 598 665 IPR019559 -
Apr9g2223 671 Pfam Cullin protein neddylation domain 601 663 IPR019559 -
Apr9g2223 671 Gene3D Ring Box Chain A; domain 5 506 577 - -
Apr9g2223 671 Gene3D Cullin Repeats 3 141 - -
Apr9g2223 671 SUPERFAMILY Cullin homology domain 388 583 IPR036317 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2223 Apr-Chr9 30138251 30146473 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2223 K03347 - gmx:100793682 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2223 9 30138251 30146473 Apr1g2169 1 31160892 31170747 PCT
Apr1g1637 1 26012168 26021443 Apr9g2223 9 30138251 30146473 PCT