Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1637 ATGTCTCTCCCCACCAAACGGTCCTCTTCCTCGCCGTCACCCCCTATGAAAAAGGCCAAGTCCCTCCGCACCCCTTCCGACGACGCCGTTTTGGACCCTTCCCCCATGCCTCTCGACGACGATCTCAAACCCGACCTTCCCAATGCTCGGGCCGCCAATCTCTCCCGCAAGAAAGCCACTCCTCCCCAACCCGCGAAGAAGCTCCTCATCAAGCTCCACAAAGCTAAACCAACGTTGCCCACAAATTTTGAGGAGGATACATGGGCTAAGCTAAAATCTGCTATTTGTGCTATATTTTTGAAGCAACCTAACTCTTGTGACCTGGAGAAGCTTTATCAGGCTGTAAATGATCTCTGCCTTTATAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGCACACATATCTGCTGCACTGCAGTCTTTGGTTGGCCAAAGCCCAGATTTGGTTGTTTTTCTATCTTTAGTTGAGAGATGTTGGCAGGATCTCTGTGACCAAATGCTGATGATTCGTGGTATAGCCTTGTATCTGGATAGGACTTATGTAAAGCAAACAGCAAATGTACGGTCACTATGGGACATGGGCTTACAACTTTTCCGCAAACATCTTTCATCGTCTCCTGAAGTAGAACATAAAACTGTTACTGGTCTTCTACGAATGATTGAAAGTGAAAGATTAGGTGAAGCAGTGGATAGAACTCTTCTAAACCATCTTTTGAAGATGTTTACTGCTCTGGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGAATGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAGACAAGATTGCAAGAAGAACATGACAGATGTTTGATATACTTGGATGCAAGTACTAGGAAACCATTGATAGCAACGGCAGAAAAGCAACTTCTTGAACGTCATATACCTGGCATTCTTGATAAGGGATTCTCTATGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATGTACTCACTCTTTTCAAGGGTCAATGCCCTTGAGTCTCTGAAGCAGGCCCTAAGTTCATACATCAGGAGAACTGGGCAGGGAATTGTTTTGGATGAGGAGAAAGATAAAGATATGGTTTCATCCCTTCTGGAATTTAAGGCCTCTCTTGACACAACATGGGAAGAAAGTTTTTTCAAGAACGAAGCATTCTGTAACACCATTAAAGATGCATTTGAGCATCTTATCAATCTTCGGCAGAACCGACCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTGCGTGCAGGTAATAAGGGCACTTCAGAAGAAGAATTGGAGGGTACACTTGATAAAGTCCTGGTTTTATTCAGGTTTATTCAGGGCAAGGATGTGTTTGAGGCCTTCTATAAGAAGGATCTTGCAAAAAGACTGCTGTTAGGGAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGTTGAAGACCGAGTGTGGCAGCCAGTTCACAAACAAACTAGAAGGAATGTTTAAGGACATCGAATTATCCAAAGAAATAAATGAGTCCTTCAAACAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTGCATGTCTTGACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTATCAGGACATTTTCAAAGAGTTCTATCTGAGCAAATACAGTGGAAGACGTCTGATGTGGCAAAATTCATTAGGTCACTGTGTCTTGAAAGCGGAGTTTCCTAAAGGGAAAAAGGAGTTAGCTGTCTCCCTATTTCAGACTGTTGTTCTGATGCTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATATCAAAGACTCTACTGGTATCGAGGACAAGGAATTGAGAAGGACTCTGCAATCACTTGCCTGTGGAAAAGTTCGTGTCCTACAAAAGTTGCCGAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTCAATGAAGGGTTTGCAGCTCCTCTTTACCGTATAAAGGTAAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACTGAAAGAGTCTTCCAGGACCGTCAATATCAGGTTGATGCTGCTATTGTGAGGATCATGAAGACTAGGAAAGTGCTTAGTCACACGCTTCTTATTACTGAACTCTTCCAACAGCTCAAATTTCCTATAAAACCAGCTGATTTGAAGAAAAGGATCGAAAGCCTGATTGACAGGGAGTACCTGGAGAGGGATAAGAACAACCCTCAAATATACAATTACCTGGCATAG 2355 0.428 MSLPTKRSSSSPSPPMKKAKSLRTPSDDAVLDPSPMPLDDDLKPDLPNARAANLSRKKATPPQPAKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPNSCDLEKLYQAVNDLCLYKMGGNLYQRIEKECEAHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSSSPEVEHKTVTGLLRMIESERLGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVETRLQEEHDRCLIYLDASTRKPLIATAEKQLLERHIPGILDKGFSMLMDGNRIEDLQRMYSLFSRVNALESLKQALSSYIRRTGQGIVLDEEKDKDMVSSLLEFKASLDTTWEESFFKNEAFCNTIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFAAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1637 784 PANTHER CULLIN-4A 46 784 - -
Apr1g1637 784 Gene3D Cullin Repeats 326 426 - -
Apr1g1637 784 Gene3D Cullin; Chain C, Domain 2 543 698 - -
Apr1g1637 784 SUPERFAMILY Cullin repeat-like 82 424 IPR016159 -
Apr1g1637 784 ProSitePatterns Cullin family signature. 757 784 IPR016157 GO:0006511|GO:0031461|GO:0031625
Apr1g1637 784 SUPERFAMILY Cullin homology domain 425 695 IPR036317 -
Apr1g1637 784 MobiDBLite consensus disorder prediction 1 65 - -
Apr1g1637 784 Gene3D - 711 784 IPR036388 -
Apr1g1637 784 SMART Cullin_Nedd8_2 713 778 IPR019559 -
Apr1g1637 784 Gene3D Cullin Repeats 75 206 - -
Apr1g1637 784 Pfam Cullin family 88 685 IPR001373 GO:0006511|GO:0031625
Apr1g1637 784 Gene3D Cullin Repeats 209 323 - -
Apr1g1637 784 SUPERFAMILY "Winged helix" DNA-binding domain 696 784 IPR036390 -
Apr1g1637 784 PANTHER CULLIN 46 784 IPR045093 -
Apr1g1637 784 MobiDBLite consensus disorder prediction 1 17 - -
Apr1g1637 784 SMART cul_2 458 607 IPR016158 -
Apr1g1637 784 Pfam Cullin protein neddylation domain 716 776 IPR019559 -
Apr1g1637 784 ProSiteProfiles Cullin family profile. 428 657 IPR016158 -
Apr1g1637 784 Gene3D Cullin Repeats 427 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1637 Apr-Chr1 26012168 26021443 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1637 K10609 - gmx:100805491 1449.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1637 1 26012168 26021443 Apr1g1637 1 26012168 26021443 ECH
Apr1g1637 1 26012168 26021443 Apr9g2223 9 30138251 30146473 PCT