Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2169 ATGTCTATGAGTGAGCGCAAGACTATTGACCTAGAACAAGGATGGGACTTTATGCAGAAGGGAATTATGAAGCTGAAGAACATTCTAGAAGGACTGCCTGAGCCTCAGTTCAGTTCTGAGGACTATATGATGCTATACACGTATCCATCTATGACCATATACAATATGTGCACTCAAAAGCCTCCTCATGACTATTCCCAACAACTGTACGACAAGTACAGGGAATCATTTGAAGAGTACATCGTATCAACAGTGTTACCTTCTTTGAGAGAGAAGCATGATGAATTTATGCTAAGAGAGCTTGTGAAAAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGTTTCTTTCACTATTTGGACCGTTACTTTATTGCTCGGAGATCTCTTCCACCACTAAATGAAGTTGGGCTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAACGGGAAAGTCAGAGATGCAGTAATTTCTCTTATTGATCAAGAGCGTGAAGGAGAGCAGATTGACCGAGCTCTATTGAAGAATGTATTAGATATATTTGTTGAAATTGGAATGGGGCAAATGGACCACTATGAGAATGATTTTGAGGCTGCCATGCTCAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCAAACTGGATCCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAATGCTTAAAACGGGAGAAAGATAGAGTTGCCCATTACTTGCACTCTAGTAGTGAACCAAAGTTATTAGAGAAAGTTCAACATGAACTGTTATCTGTATATGCAAATCAACTCCTTGAAAAAGAGCATTCTGGATGTCATGCATTACTTAGAGACGACAAGGTTGAAGACTTGTCGAGGATGTTCAGGCTCTTTTCTAAAATACCCCGAGGCTTAGATCCTGTTTCCAGTATATTTAAGCAGCATGTCACTGCTGAAGGTATGGCCTTGGTGAAGTTGGCTGAAGATGCAGCTAGTAACAGAAAGGCAGAGAAAAAGGATATAGTTGGTGTACAGGAGCAGGTTTTTGTTCGGAAGGTGATTGAACTTCATGACAAGTACCTGGCATACGTAAATGATTGTTTCCAAAATCACACTCTTTTCCACAAGGCTCTTAAGGAGGCTTTTGAAATCTTTTGCAACAAGGGTGTTGCTGGAAGCTCAAGTGCTGAACTGCTTGCCACTTTTTGTGATAATATTCTTAAGAAAGGGGGAAGTGAAAAATTGAGTGACGAAGCAATTGAAGAAACTCTAGAGAAGGTTGTCAAATTGCTCGCCTATATTAGTGACAAGGATTTGTTTGCTGAATTTTACAGGAAAAAACTTGCTCGGAGGCTTCTTTTTGACAAGAGTGCCAATGATGACCATGAGAGAAGTATTTTGACAAAACTGAAGCAACAATGTGGTGGTCAATTTACCTCAAAGATGGAAGGAATGGTTACAGATTTGACACTGGCAAAGGAGAACCAAACAAGCTTTGAGGAGTATTTAAGCAATAATCCTAATGCAGACCCTGGAATAGATTTGACAGTTACAGTTCTGACAACTGGCTTCTGGCCTAGTTACAAATCTTTTGACCTCAATCTTCCAGCAGAAATGGTTAGATGTGTTGAAGTTTTCAAGGAATTTTATCAAACAAAAACTAAGCACAGAAAACTTACTTGGATTTATTCCTTGGGTACCTGCAACATAAGTGGGAAATTCGAACCAAAAACTGTGGAGCTGATTGTAACAACTTATCAGGCTTCGGCATTGCTTCTTTTTAATTCATCAGATAGACTGAGTTATTCAGAGATAATGACTCAGTTAAACTTATCTGATGATGATGTTATTAGACTGCTCCATTCGTTGTCCTGTGCCAAGTACAAGATTCTTAACAAGGAACCAAGCACGAAAACAGTATCTTCTACTGATTATTTTGAATTTAATTCAAAATTTACGGACAAAATGAGGAGGATCAAGATTCCTCTTCCTCCTGTGGATGAGAAGAAAAAAGTAATTGAGGATGTTGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGGAAAGTTTTAAATTACCAACAGTTAGTTATGGAGTGTGTTGAGCAGTTAGGTCGCATGTTTAAGCCTGATGTTAAGGCAATTAAGAAGCGGATTGAAGATTTGATCTCTCGAGACTACCTGGAAAGAGACAAAGATAATGCAAATTTATTCAGGTACTTGGCGTGA 2247 0.3907 MSMSERKTIDLEQGWDFMQKGIMKLKNILEGLPEPQFSSEDYMMLYTYPSMTIYNMCTQKPPHDYSQQLYDKYRESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTAEGMALVKLAEDAASNRKAEKKDIVGVQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEIFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILNKEPSTKTVSSTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLNYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANLFRYLA* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2169 748 Gene3D Cullin; Chain C, Domain 2 511 664 - -
Apr1g2169 748 Gene3D Cullin Repeats 3 145 - -
Apr1g2169 748 Gene3D Cullin Repeats 394 507 - -
Apr1g2169 748 Pfam Cullin protein neddylation domain 678 740 IPR019559 -
Apr1g2169 748 SUPERFAMILY "Winged helix" DNA-binding domain 663 748 IPR036390 -
Apr1g2169 748 SUPERFAMILY Cullin repeat-like 11 388 IPR016159 -
Apr1g2169 748 Gene3D - 665 748 IPR036388 -
Apr1g2169 748 PANTHER CULLIN 2 747 IPR045093 -
Apr1g2169 748 SMART Cullin_Nedd8_2 675 742 IPR019559 -
Apr1g2169 748 Pfam Cullin family 26 651 IPR001373 GO:0006511|GO:0031625
Apr1g2169 748 Gene3D Cullin Repeats 271 393 - -
Apr1g2169 748 Gene3D Cullin Repeats 146 268 - -
Apr1g2169 748 PANTHER CULLIN 3B 2 747 - -
Apr1g2169 748 SUPERFAMILY Cullin homology domain 392 661 IPR036317 -
Apr1g2169 748 ProSiteProfiles Cullin family profile. 393 623 IPR016158 -
Apr1g2169 748 SMART cul_2 424 573 IPR016158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2169 Apr-Chr1 31160892 31170747 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2169 K03347 - aprc:113853141 1489.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2169 1 31160892 31170747 Apr1g2169 1 31160892 31170747 ECH
Apr9g2223 9 30138251 30146473 Apr1g2169 1 31160892 31170747 PCT