Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2172 ATGTACTGTTGCAACCTTTGCAATCGCAGTACTCTTGATTTGATAGTGAGTTTGTGTCAGAGAGAGAGAGAGAGAGAGAAGATGTGGCCATTCAGCAGGAAAGGAGCTTCTGGGTTTTCATCATCTTCAACTGCAGAAGAAGTTACTGAAGGCATCGATGGAACTGGCCTCACTGCCATTGTCACTGGTGCATCCAGTGGTATTGGCACTGAGACTACGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGGCGTCAGAAATATGACTGCTGGCAAAGATGTCAAAGAAACAATACTTAAGGAGATTCCCTCAGCTAAAGTTGATGCCATGGAGTTAGATCTCAGTTCAATGGAGTCTGTCAAGAAATTTGCATCTGAGTACAAGTCCTCTGGACTTCCATTGAACATCTTGATAAACAATGCAGGAATCATGGCATGCCCTTTCACTCTCTCCAAAGACAACATTGAACTACAGTTCGCCACAAATCACATAGGCCATTTTCTCCTGACAAATCTTTTGTTGGACACTCTGAAGAAAACATCGCGTGAAGCTAAGAAAGAAGGAAGAATTGTTAATGTATCCTCTGAGGCTCACCGATTTGCATATTCTGAAGGAATTCGTTTTGACAAAATCAATGGCCAATCAAGTTACAACAGCTGGCGTGCATATGGGCAGTCAAAGCTTGCTAACATTTTGCATGCAAATGAACTTACCAAACGTCTCAAGGAAGATGGGGTGGATATTACTGCAAATTCTATTCATCCAGGATCAATTACAACCAATCTTTTCCGTTATAACAGCACAGTGAACGGATTCAAATATTCCTCATGTTTAATATGGGATTCTTCTGACCTTTCTTGTTCACCTTCTCCAACCTTAATGCAGGGAGCAGCAACATCATGCTATGTAGCATTGCACCCACAAGCGAAAGGAATTAGTGGTAAGTACTTTTCAGACAGTAATGTCTCCACAACAACCTCACAGGGAACTGACCCTGATTTGGCTAAGAAACTGTGGGATTTCAGCATGAATTTGATCAAGTAG 1050 0.4219 MYCCNLCNRSTLDLIVSLCQREREREKMWPFSRKGASGFSSSSTAEEVTEGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVIMGVRNMTAGKDVKETILKEIPSAKVDAMELDLSSMESVKKFASEYKSSGLPLNILINNAGIMACPFTLSKDNIELQFATNHIGHFLLTNLLLDTLKKTSREAKKEGRIVNVSSEAHRFAYSEGIRFDKINGQSSYNSWRAYGQSKLANILHANELTKRLKEDGVDITANSIHPGSITTNLFRYNSTVNGFKYSSCLIWDSSDLSCSPSPTLMQGAATSCYVALHPQAKGISGKYFSDSNVSTTTSQGTDPDLAKKLWDFSMNLIK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2172 349 Gene3D - 50 349 - -
Apr8g2172 349 PANTHER RETINOL DEHYDROGENASE 29 349 - -
Apr8g2172 349 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 29 349 - -
Apr8g2172 349 CDD retinol-DH_like_SDR_c_like 56 341 - -
Apr8g2172 349 PRINTS Glucose/ribitol dehydrogenase family signature 58 75 IPR002347 -
Apr8g2172 349 PRINTS Glucose/ribitol dehydrogenase family signature 134 145 IPR002347 -
Apr8g2172 349 PRINTS Glucose/ribitol dehydrogenase family signature 184 200 IPR002347 -
Apr8g2172 349 PRINTS Glucose/ribitol dehydrogenase family signature 248 265 IPR002347 -
Apr8g2172 349 Pfam short chain dehydrogenase 58 204 IPR002347 -
Apr8g2172 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 56 326 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2172 Apr-Chr8 32258797 32265217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2172 58 210 Acyl Lipid Metabolism Gene Families AT1G62610 31.098 5.73e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2172 - - gmx:100784001 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0683 6 10373889 10378818 Apr8g2172 8 32258797 32265217 PCT
Apr8g2172 8 32258797 32265217 Apr6g0684 6 10399788 10410688 PCT