Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0684 ATGGGTTCTTCTGGTTTTTCATTATCTTCTACTGCAGAGGAAGTAACTGAAGGTGTCGATGGAAGTGGCCTCACTGCAATTGTCACAGGAACAACCCATGGCATTGGCACTGAGACTGCAAGAGTTCTTGCTTTGCGTGGTGTTCATGTGATTATGGGAGTGAGAAATATGATTGCTGGGAATGATGTTAAAGAGGCAATACTTAAAGAGATTCCAACAGCTAAAGTCGATGTCATGGAGTTAGATCTTAGCTCAATGGCATCTGTTCGGAAATTTGCATCAGAATTCATATCATCTGATCTTCCCATAAACATCTTGATAAACAATGCAGGAATTTGTGCAACTCCTTTCACGCTATCGAAAGACAACATTGAACTACAATTTGCCACAAATCACTTAGGTCATTTTCTTTTAACGAATCTTTTGTTGGATACTATGAAGAAAACAACAACTGAAAGCAAGAAAGAAGGAAGGATTATTAATGTAACTTCTGATGGTCACCAATATACATATCCTGAAGGAATCCTTTTTGATAAAATTAGTGATGAATCAAGCTACCAAAAGTGGCGCGCATATGGACAATCAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCAAGACAACTTAAGGAAGATGGGGTAGATATTACAGCAAATTCTCTTCATCCGGGAGCCATTATCACTAATATTTATAATCCTATGCATGGTGGCTATCCTCCAGCTGATCTAATTGAACTGCTTGGAAAGTATGTGCTTAAAAGCATCCAACAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGAAGTAACTGGTGAGTATTTTTCAGATTGTAATTTGGCTAAAGCAAGCTCACAAGCAACAGACGCTGATTTGGCAAAGAAACTTTGGGATTTTAGCATGAATATAATTGAGTAG 933 0.3859 MGSSGFSLSSTAEEVTEGVDGSGLTAIVTGTTHGIGTETARVLALRGVHVIMGVRNMIAGNDVKEAILKEIPTAKVDVMELDLSSMASVRKFASEFISSDLPINILINNAGICATPFTLSKDNIELQFATNHLGHFLLTNLLLDTMKKTTTESKKEGRIINVTSDGHQYTYPEGILFDKISDESSYQKWRAYGQSKLANILHANELARQLKEDGVDITANSLHPGAIITNIYNPMHGGYPPADLIELLGKYVLKSIQQGAATTCYVALHPQVKEVTGEYFSDCNLAKASSQATDADLAKKLWDFSMNIIE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0684 310 CDD retinol-DH_like_SDR_c_like 23 302 - -
Apr6g0684 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 101 112 IPR002347 -
Apr6g0684 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Apr6g0684 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 211 IPR002347 -
Apr6g0684 310 PANTHER RETINOL DEHYDROGENASE 2 310 - -
Apr6g0684 310 Pfam short chain dehydrogenase 25 174 IPR002347 -
Apr6g0684 310 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 310 - -
Apr6g0684 310 Gene3D - 16 310 - -
Apr6g0684 310 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Apr6g0684 310 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Apr6g0684 310 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Apr6g0684 310 PRINTS Glucose/ribitol dehydrogenase family signature 192 211 IPR002347 -
Apr6g0684 310 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
Apr6g0684 310 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 287 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0684 Apr-Chr6 10399788 10410688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0684 27 164 Acyl Lipid Metabolism Gene Families AT1G62610 30.612 9.01e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0684 - - cam:101490020 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0684 6 10399788 10410688 Apr6g0684 6 10399788 10410688 ECH
Apr8g2172 8 32258797 32265217 Apr6g0684 6 10399788 10410688 PCT