Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0683 ATGTGGCCGTTTAACAGAAAAGGTGCTTCTGGGTTTTCATCGTCTTCCACTGCCGAGGATGTTACATATGGAATCGATGGTAGTGGTCTCACTGCTCTTGTTACAGGGGCTTCCAGTGGTATTGGTGTTGAGACTACCCGTGTTCTTGCTATGCGTGGTGTCCATGTAATTATGGGGGTGAGAAATATGATTGCTGCAAAAGATGTTAAAGAAAGAATACTTAAGGAGTTTCCCGCAGCTAAAGTTGATGCCATGGAATTAGACCTTAGTTCAATGACATCTGTTCGGAAATTTGCATCAGAATTCAATTCATCTGGTCTTCCATTGAACATTCTGATAAACAATGCAGGAATTTTTGCACCCCCTTTCACACTATCCAAAGACATCATTGAATTACAATTTGCCACAAATTACTTGGATACTATGAAGAAAACAACATGTGAATTTAAGAAACAAGGAAAAATTGTTAATGTCTCCTCAGCATCTCATCAATTAACATATGATGAAGGAATCCTCTTTGACAAAATCAATGATCAGTCAAGTTACCAAAGTTGGCTGGCATATGGACAATCAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCAAGACGTCTCAAGGAAGATGGGATAGATATTACTGCTAATTCGCTTCATCCAGGAGCTGTTGCCACCAATGTTTTTCGTCACAACATTATGTTGTCTGGTGCAATTAATATGCTAGGGAGATTTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACAACATGTTATGTAGCATTGCACCCGCAAGTGACAGGAATGAATGGTGAGTATTTTGTCGATTGTAATCTTGACAGAGCTAGCTCACTGGGAAGGGACACTGATTTGGCCAAGAAGCTCTGGGATTTCAGCTTAAATTTGATTAAGTAG 912 0.398 MWPFNRKGASGFSSSSTAEDVTYGIDGSGLTALVTGASSGIGVETTRVLAMRGVHVIMGVRNMIAAKDVKERILKEFPAAKVDAMELDLSSMTSVRKFASEFNSSGLPLNILINNAGIFAPPFTLSKDIIELQFATNYLDTMKKTTCEFKKQGKIVNVSSASHQLTYDEGILFDKINDQSSYQSWLAYGQSKLANILHANELARRLKEDGIDITANSLHPGAVATNVFRHNIMLSGAINMLGRFVLKNVQQGAATTCYVALHPQVTGMNGEYFVDCNLDRASSLGRDTDLAKKLWDFSLNLIK* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0683 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Apr6g0683 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 161 IPR002347 -
Apr6g0683 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 188 207 IPR002347 -
Apr6g0683 303 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 303 - -
Apr6g0683 303 PANTHER RETINOL DEHYDROGENASE 2 303 - -
Apr6g0683 303 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 279 IPR036291 -
Apr6g0683 303 CDD retinol-DH_like_SDR_c_like 29 295 - -
Apr6g0683 303 Gene3D - 26 303 - -
Apr6g0683 303 Pfam short chain dehydrogenase 31 165 IPR002347 -
Apr6g0683 303 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Apr6g0683 303 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Apr6g0683 303 PRINTS Glucose/ribitol dehydrogenase family signature 147 163 IPR002347 -
Apr6g0683 303 PRINTS Glucose/ribitol dehydrogenase family signature 188 207 IPR002347 -
Apr6g0683 303 PRINTS Glucose/ribitol dehydrogenase family signature 211 228 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0683 Apr-Chr6 10373889 10378818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0683 29 162 Lipid Metabolism Gene Families AT1G24470 30.769 3.45e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0683 - - gmx:100794358 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0683 6 10373889 10378818 Apr8g2172 8 32258797 32265217 PCT