Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1885 ATGGATCGGCTTTCATCAGCAACTACGTTTGAAAGCATGCATTATGGCAGTGCAAACCAAATGGGTTTGATTTGGCAGCAAGCCAGGGCACCCTTGATGGTTCCATTGCTGAAATTGTTAGTGGTTTTGTGCCTAGCCATGTCAGTTATGTTATTTGTGGAGAGAGTTTATATGGGTATAGTCTTAGTCATTTTGAAGTTTTTTAGGCGAAAGCCAGAGAAGCAATACAAATGGGAGCCACTCAGGGATGACCTTGAGCTAGGAAACTCTGCATACCCAATGGTCTTGGTGCAAATTCCAATGTACAATGAGAAAGAGGTGTATCAATTATCAATTGGAGCTGCCTGTGGGCTATCATGGCCATCTGATAGAATTATTATTCAAGTTCTTGATGATTCCACAGACCCAATCATTAAGAATATGGTGGAGGTGGAATGCCAGAGATGGGCCAGCAAAGGCATAAACATAAAGTATGAGATCAGAGAGAACAGAAATGGATACAAAGCTGGGGCTCTCAAAGAAGGCATGAAGCACAGTTATGTCAATCTATGTGACTATGTGGCCATCTTTGATGCTGATTTCCAACCTGAGCCTAACTTCCTTTGGCGCACCATCCCATTCCTGGCTCACAACCCAGAAGTTTCACTTGTCCAAGCTCGATGGAAATTTGTAAATGCTGATGAATGCTTAATGACAAGAATGCAAGAGATGTCATTGGACTATCATTTCCTTGTGGAGCAGGAAGTTGGGTCCTCAACCTATGCTTTCTTTGGTTTCAATGGCACAGCTGGTGTTTGGAGAATTTCAGCATTAAATGAAGCTGGTGGATGGAAGGATCGCACAACAGTTGAAGATATGGATTTGGCTGTCCGAGCTGGTCTCAGAGGCTGGAAATTTGTCTACCTTAGTGACCTCAAGGTGAAAAATGAATTGCCAAGTACCTTCAAAGCCTACCGTTATCAGCAGCACCGGTGGTCATGTGGCCCAGCTAATCTTTTCAGGAAAATGGCAATGGAAATCTTAAGAAACAAGAAAGTCTCCATGTGGAAGAAGTTTTATGTGATTTATAGTTTTTTCTTTGTACGAAAGATCGTAGCCCATGTGGTCACATTTGTATTCTACTGTATCGTGATGCCAGCAACTGTTTTAGTTCCAGAAGTAGAAGTTCCCAAGTGGGGTGCTGTCTATATACCTTCTATCATTACCCTCCTTAATGCTGTTGGAACTCCAAGGTCAATCCACTTATTGATATTCTGGATACTTTTTGAAAATGTCATGTCAATGCATAGGACCAAGGCAACACTTACAGGTTTGCTTGAGGCAGGAAGAGTCAATGAATGGGTAGTTACTGAGAAATTGGGAGATGCTCTTAAAACAAAATCAGTTGGCAAAGCAGCTAAGAAGCCTCGTATCAGGATTGGTGAAAGGCTTTATTTCCTAGAACTTGGAGTGGGAGCCTACCTCTTTTTCTGTGGATGGTATGATCTTACCCATGGGAGGAACCACTACTTCATATATCTTTTCCTGCAATCTTTTGCCTTCTTTGTGGTTGGGGTTGGCTATATTGGCACCTTTGTTCCTAATTCTTAG 1590 0.4226 MDRLSSATTFESMHYGSANQMGLIWQQARAPLMVPLLKLLVVLCLAMSVMLFVERVYMGIVLVILKFFRRKPEKQYKWEPLRDDLELGNSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPIIKNMVEVECQRWASKGINIKYEIRENRNGYKAGALKEGMKHSYVNLCDYVAIFDADFQPEPNFLWRTIPFLAHNPEVSLVQARWKFVNADECLMTRMQEMSLDYHFLVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRAGLRGWKFVYLSDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMAMEILRNKKVSMWKKFYVIYSFFFVRKIVAHVVTFVFYCIVMPATVLVPEVEVPKWGAVYIPSIITLLNAVGTPRSIHLLIFWILFENVMSMHRTKATLTGLLEAGRVNEWVVTEKLGDALKTKSVGKAAKKPRIRIGERLYFLELGVGAYLFFCGWYDLTHGRNHYFIYLFLQSFAFFVVGVGYIGTFVPNS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1885 529 PANTHER - 9 528 - -
Apr8g1885 529 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 85 310 IPR029044 -
Apr8g1885 529 Pfam Glycosyl transferase family group 2 186 378 IPR001173 -
Apr8g1885 529 PANTHER BNAC09G36340D PROTEIN 9 528 - -
Apr8g1885 529 SUPERFAMILY Nucleotide-diphospho-sugar transferases 90 369 IPR029044 -
Apr8g1885 529 CDD CESA_CaSu_A2 93 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1885 Apr-Chr8 29340045 29344004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1885 20 528 Miscellaneous Gene Families AT5G03760 77.647 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1885 K13680 - gmx:100797453 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0280 4 2337578 2343193 Apr8g1885 8 29340045 29344004 ECH
Apr8g0582 8 5228561 5234079 Apr8g1885 8 29340045 29344004 ECH
Apr8g1885 8 29340045 29344004 Apr8g1885 8 29340045 29344004 ECH