Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0280 ATGGATCGCCTTTCTTCTAATGCCATTATCCCCGATGCATTTCAAGGTGCCAAAGATGACCTTACCATGCAGCTTGCATTGGTTTGGAGTCAGATCAAAGCTCCATTGATTGTCCCGTTACTAAGAATATCAGTGTTTCTGTGCTTGGTCATGTCGGTGATGATGTTCATTGAGAGGGTTTACATGGGCATTGTCATCACTCTGGTGAAATTGTTTGGGAGAAAGCCAGAGAAACGTTACAAGTGGGAGCCAATAAAGGACGACATAGAGTTGGGGAACTCTTGTTATCCAATGGTCTTGGTTCAAGTCCCTATGTACAACGAAAGAGAGGTTTATCAGCTATCAATTGGAGCTGCATGTGGGCTTTCTTGGCCTTCAGATAGGATTATCATACAAGTTCTTGATGACTCAACTGACCCAACAATCAAGGAGTTGGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAGGTGAGGGACAATAGGAATGGATACAAAGCCGGTGCTCTCAAAGAAGGCATGAAACGCAGCTACGTGAAACAATGTGATTGTGTTGCCATCTTTGATGCTGATTTTCAACCAGAACCTGATTTCTTGTGGCGCACCGTTCCATTCTTAGTGCACAATCCTGAACTAGGCCTCATTCAGGCTCGGTGGAAATTTGTGAATGCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCGCTAGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGTTTCAACGGGACTGCGGGAGTATGGAGAATTTCGGCACTGAATGAAGCTGGTGGGTGGAAGGATAGAACCACTGTGGAAGATATGGACTTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCCTATACTTGTCTGACTTGAAGGTTAAAAATGAACTGCCAAGTACTTTCAAGGCATACCGCTACCAACAGCACCGTTGGTCGTGTGGGCCAGCAAATCTTTTCAGGAAAATGGTCATGGAGATTATCAATAACAAGAAAGTGTCATTGTGGAAAAAGATATACGTGATTTACAGCTTCTTCTTTGTTCGAAAGGTCGTAGCACACATCAACACTTTTGTGTTTTATTGCATTGTATTACCTGCAACAGTTTTGGTGCCTGAGGTTGCGGTTCCAAAGTGGGGAGCTGTTTATATTCCTTCCGTCATCACCCTTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTACTTGTCTTCTGGATTCTCTTTGAGAATGGCATGTCTCTGCATAGAACCAAGGCAACGATTATCGGTCTACTCGAGGCTAGTCGAGTCAATGAATGGATTGTCACTGAAAAACTTGGAGATGCTCTCAAGGCTAAAGCAGGAATTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGGATTCACTTGTTAGAACTTGGTGTTGGATTCTACCTCTTCTTTTGTGGCTGCTATGATTTTATGTTCGGGAAAAACCACTTCTTCATCTACCTCTTTATCCAGGCATTTGCCTTCTTCATTATGGCATTTGGATATGTGGGCACTTTTGTATCCAACTCCTAG 1602 0.4363 MDRLSSNAIIPDAFQGAKDDLTMQLALVWSQIKAPLIVPLLRISVFLCLVMSVMMFIERVYMGIVITLVKLFGRKPEKRYKWEPIKDDIELGNSCYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTVPFLVHNPELGLIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIINNKKVSLWKKIYVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVAVPKWGAVYIPSVITLLNAVGTPRSLHLLVFWILFENGMSLHRTKATIIGLLEASRVNEWIVTEKLGDALKAKAGIKAPKKPRFRIGDRIHLLELGVGFYLFFCGCYDFMFGKNHFFIYLFIQAFAFFIMAFGYVGTFVSNS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0280 533 Pfam Glycosyltransferase like family 2 98 332 - -
Apr4g0280 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 90 313 IPR029044 -
Apr4g0280 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 96 373 IPR029044 -
Apr4g0280 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9-LIKE 1 531 - -
Apr4g0280 533 PANTHER - 1 531 - -
Apr4g0280 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0280 Apr-Chr4 2337578 2343193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0280 1 532 Miscellaneous Gene Families AT5G03760 81.051 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0280 K13680 - gmx:100782772 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0280 4 2337578 2343193 Apr8g1885 8 29340045 29344004 ECH
Apr4g0280 4 2337578 2343193 Apr4g0280 4 2337578 2343193 ECH
Apr4g0280 4 2337578 2343193 Apr8g0582 8 5228561 5234079 PCT