Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0907 ATGACTCTAATGACTCCTCCGCCATTAGATCCGCAGGACGATGAGATGCTGGTTCCTAACTCCGACGTGCCCGAAGGTCCTCAACCAATGGAAGCAGTCCAAGCAGAAAACATGACTACGGTTGATGCTCCCACAGTGGATGACCCCCCATCCGCGAGATTCACGTGGACCATTGACAATTTTTCAAGGCTCACAAAAAAAATTTATTCTGACATTTTCAGTGTTGGGGGCTACAAATGGCGGATACTTATCTTTCCAAAGGGGAACAATGTTGATCATATGTCGATGTATGTAGATGTTGCAGATTCACCTATGTTGCCTTATGGTTGGAGTAGATATGCCCAGTTCAGCTTGACTGTTGTTAATCAAATTCATAGTAAATATTCAATCAGAAAAGAAACACAACACCAGTTCAATGCACGTGAGAGTGATTGGGGTTTCACTAATTTCATGCCGCTTGCTGAATTATATGATCCTACTAGAGGTTATCTTGTGAACGATACATGTGTTGTTGAGGCTGATGTTGCTGTGCGTAAAGATCTTGATTACTGGGCACATGACTCAAAAAAGGAAACTGGTTATGTTGGACTGAAAAACCAAGGAGCTACTTGTTACATGAATTCTCTGCTTCAGACATTGTATCACATTCCTTATTTTCGAAAGGCCGTGTACCATATGCCTACAACAGAAAATGATATGCCATCAGGAAGCATCCCTCTAGCATTACAGAGTTTGTTTTACAAATTGCAGTATAGTGACACTAGTGTAGCAACGAAAGAGTTAACCAAGTCTTTTGGATGGGATACATATGATTCATTCATGCAGCATGATGTTCAAGAACTTAATAGGGTTCTTTGTGAAAAACTGGAAGACAAAATGAAGGGAACTGTTGTGGAAGGCACTATACAGCAGTTGTTTGAAGGCCACCATATGAACTATATTGAATGTATAGGTGTGGATTATAAATCAACAAGAAAAGAATCATTTTATGATCTTCAGCTTGATGTGAAAGGTTGTAAGGATGTGTATGCTTCTTTCGATAAGTATGTGGAAGTGGAACGGCTTGAGGGGGATAACAAGTATCAGGCAGAGAATTATGGTTTACAGGATGCTAGGAAGGGTGTATTATTCATTGATTTCCCACCTGTCCTTCAGCTTCAATTAAAACGTTTCGAGTATGATTTTATGCGAGACACCATGGTAAAGATCAATGACCGCTATGAGTTCCCCTTGCAATTAGATCTTGATAGGGATAATGGCAAGTATCTATCTCCAGAAGCAGACAGAAGTATTCGCAATCTTTATACACTTCACAGTGTTTTGGTTCACAGTGGTGGGGTGCATGGTGGACACTACTATGCTTACATTACACCAACTCTGTCAAATCAGTGGTTTAAATTTGACGATGAACGAGTCACAAAAGAAGATACAAAGAGGGCTTTAGAAGAACAATTTGGTGGTGAAGAAGAGTTACCTCATACAAATCCTGGGTTCAACAACTCTCCTTTCAAATTTACAAAGTACTCAAATGCATATATGCTTGTCTATATTCGTGATAGTGACAAGGATAAAGTAATCTGTAATGTTGATGAGAAGGACATTGCTGAACACCTCAGAATAAGATTAAAGAAAGAACAAGAAGAAAAAGAGCTGAAGAGAAAGGAGAAGGCTGAGGCTCACTTGTACACCATCATAAAGGTTGCCCGTGATGATGATATGCATGAACAAATTGGAAATGATATATTCTTTGATCTTGTGGATCATGATAAAGTTCGATGTTTTCGTATTCAAAAACAAATGCCTTTTATCCTTTTCAAGGAAGAAGTTGCTAAGGAGTTCGGTATACCTGTCCAGTGCCAACGTTTTTGGTTGTGGGCTAAGCGTCAAAACCACACATATAGGCCAAATAGACCACTGACCTCTCAGGAAGAAGCACAATCAGTTGGACAAGTAAGAGAAGTTTCCCATAAGGTAAATCCTGCGGAGCTGAAGTTATTTTTGGAACTGGAAATGGGGCAGGATTTGCGGCCTATTCCTCCTCCTATGAAGTCAAAAGAGGAGCTCGTACTTTTCTTTAAACTATATGAACCTTCCAATGAGAAGCTGCGGTATGCTGGACGGCTTTTTGTGATGGGGAGTGGGAAGCCAGTAGATATATTGACAAAGCTAAATGAAATGGCTGGATATGCTCCTGATGAAGAAATACAACTATTTGAGGAAATAAAATTTGAACCTCATGTCATGTGTGAACAAGTTGACAAGAACTCAACGTTCCGTGGCAATCAGCTTGAGGATGGTGATATTATTTGCTTCCAGAAGCCCCCCAAAACTAGAAGTGGAGAGCAATATCGCTATCCAGATGTTCCTTCTTTCTTGGAATATGTTCATAACCGTCAGGTTGTTCGTTTTAGGTTTTTGGAGAAACCAAAGGAGGATGAATTCAGTCTTGAGCTGTCAAAGCTTCATGCCTATGACGATGTTGTTGAAAGAGTTGCTCAACATCTTGGTTTGGAAGATCCTTCCAAAATCAGACTCACATCTCATAACTGCTACTCTCAGCAACCTAAACCACAGCCTATCAAGTACCGAGGAATGGAACATTTATCTGACATGCTGATTCACTACAATCAGACTTCTGACATTCTATACTATGAAGTATTGGATATTCCTCTGCCAGAATTGCAATGCCTAAAAACTCTTAAAATTGCTTTCCATCATGCTACCAAGGATGAAGTGGTGATTCATACTATTAGATTACCAAAACATAGTACTGTGGCAGATGTAATTGATGATCTTAAGTCAAAGGTAGATTTATCACATCCTGATGCAGAACTTAGATTGCTTGAAGTTTTCTATCACAAGATCTACAAGATTTTCCCTATCAGTGAAAGGATTGATAATATTAATGATCAATATTGGACTCTTCGAGCAGAGGAGATTCCTGAAGAAGAGAAAAACCTTGGCCCTCATGATCGGTTGATCCATGTTTATCATTTTTTGAGAGACATTATAAATCAGCAAGTTCAGAATTTCGGAGATCCTTTCTTATTGGTTATTCATGAGAGTGAGACATTAGCCGAAGTCAAATTGCGAATACAGAAAAAGTTGCAAGTTCCAGATGAGGAGTTTTCAAAGTGGAAGTTTGCATTTTTGTCACTTAATCGTCCTGAATACCTTCAAGATTCAGATATTGTTTCCACTCGGTTTCAGAGAAGAGATATCTATGGTGCATGGGAGCAATATCTCGGGCTGGAACACGCTGACAACGCTCCTAAAAGGTCCTACACTGCCACTCAGTATCGTCACTCATATGAGAAGCCAGTAAGAATCTACAACTAG 3339 0.3968 MTLMTPPPLDPQDDEMLVPNSDVPEGPQPMEAVQAENMTTVDAPTVDDPPSARFTWTIDNFSRLTKKIYSDIFSVGGYKWRILIFPKGNNVDHMSMYVDVADSPMLPYGWSRYAQFSLTVVNQIHSKYSIRKETQHQFNARESDWGFTNFMPLAELYDPTRGYLVNDTCVVEADVAVRKDLDYWAHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECIGVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLEGDNKYQAENYGLQDARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNGKYLSPEADRSIRNLYTLHSVLVHSGGVHGGHYYAYITPTLSNQWFKFDDERVTKEDTKRALEEQFGGEEELPHTNPGFNNSPFKFTKYSNAYMLVYIRDSDKDKVICNVDEKDIAEHLRIRLKKEQEEKELKRKEKAEAHLYTIIKVARDDDMHEQIGNDIFFDLVDHDKVRCFRIQKQMPFILFKEEVAKEFGIPVQCQRFWLWAKRQNHTYRPNRPLTSQEEAQSVGQVREVSHKVNPAELKLFLELEMGQDLRPIPPPMKSKEELVLFFKLYEPSNEKLRYAGRLFVMGSGKPVDILTKLNEMAGYAPDEEIQLFEEIKFEPHVMCEQVDKNSTFRGNQLEDGDIICFQKPPKTRSGEQYRYPDVPSFLEYVHNRQVVRFRFLEKPKEDEFSLELSKLHAYDDVVERVAQHLGLEDPSKIRLTSHNCYSQQPKPQPIKYRGMEHLSDMLIHYNQTSDILYYEVLDIPLPELQCLKTLKIAFHHATKDEVVIHTIRLPKHSTVADVIDDLKSKVDLSHPDAELRLLEVFYHKIYKIFPISERIDNINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFLRDIINQQVQNFGDPFLLVIHESETLAEVKLRIQKKLQVPDEEFSKWKFAFLSLNRPEYLQDSDIVSTRFQRRDIYGAWEQYLGLEHADNAPKRSYTATQYRHSYEKPVRIYN* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0907 1112 Gene3D - 798 895 - -
Apr8g0907 1112 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 196 211 IPR018200 GO:0004843|GO:0006511
Apr8g0907 1112 Coils Coil 535 557 - -
Apr8g0907 1112 Pfam Ubiquitin carboxyl-terminal hydrolase 195 516 IPR001394 GO:0004843|GO:0016579
Apr8g0907 1112 Gene3D - 680 797 - -
Apr8g0907 1112 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 4 1034 - -
Apr8g0907 1112 SUPERFAMILY Cysteine proteinases 190 545 IPR038765 -
Apr8g0907 1112 ProSiteProfiles MATH/TRAF domain profile. 51 175 IPR002083 GO:0005515
Apr8g0907 1112 SMART math_3 53 156 IPR002083 GO:0005515
Apr8g0907 1112 Pfam Ubiquitin-specific protease C-terminal 882 1090 IPR029346 -
Apr8g0907 1112 CDD peptidase_C19C 193 521 - -
Apr8g0907 1112 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 50 190 IPR008974 GO:0005515
Apr8g0907 1112 Pfam MATH domain 58 176 IPR002083 GO:0005515
Apr8g0907 1112 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 620 872 IPR024729 -
Apr8g0907 1112 SUPERFAMILY TRAF domain-like 49 182 - -
Apr8g0907 1112 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 435 452 IPR018200 GO:0004843|GO:0006511
Apr8g0907 1112 CDD MATH 53 175 IPR002083 GO:0005515
Apr8g0907 1112 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 195 519 IPR028889 -
Apr8g0907 1112 Gene3D Cysteine proteinases 191 520 - -
Apr8g0907 1112 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 1034 - -
Apr8g0907 1112 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0907 Apr-Chr8 10028691 10062105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0907 195 484 Miscellaneous Gene Families AT2G24640 24.921 4.27e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0907 K11838 - jre:109019926 1982.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0420 4 3578697 3580580 Apr8g0907 8 10028691 10062105 ECH
Apr8g0719 8 6939195 6942915 Apr8g0907 8 10028691 10062105 ECH
Apr8g0907 8 10028691 10062105 Apr8g0907 8 10028691 10062105 ECH