Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0719 ATGGAGGATCAAAGCACAAGCAGTAAAGAAAGGATTGAGGATAAGTTTAGATGGACGATTGAGAACTTCTCCAAATTTGAGTCCAAGAAGAAGCTGTATTCTGAGAGTTTCTTCCTTGATGGGCATTCATGGAGGATTCTTATTTTCCCAAAGGGAAACGCTGTGAAGTACTTGTCAGTTTATTTGGATGGTGAGGGTCTTGCTAATTTGCCTTATGGCTGGAGCAAATTTGCAAATTTCAAGTTGACTTTAATCAATCAGGTCAATACCACAATGACAAAAGCTAAAGAATGTGAACACGAGTTCAATGCAAGAGAAAGTGATTGGGGTTTCACAACGTTTATACCTTTAGATGAATTTGAAGACTCTAGCAATGGGTTTATTGTAAATGATACTTGTATAATTGAAGCTGAAATTTGTATCAAGAAGTCAGAAGATGAGAATCAAGTAGATGATGCAGTTCCTACACAAGTTTGTGCTGAACCCATTAACCATTCTGATAACACAACCTCATTTGGTGAACTAGTGGATTTCAGAGGATTAGGTAAAATAGAAAAAGCTTTTGTTCCACTTCTAGAGGAAGTGTGTTCTTTGCATCCCTCACTTATTGATAGCCAACAAAAGAGGAGTCGTAGGTTTGCTGAATGGGCGTTGACCGCTTTAGGTCGAGTTCTCCATTTTCTTAAGGTTCAAAAGGCCAAAGATATGAATGATGAAGCTTGCAATCATCTCCAAATTTTGTGGGAGGAACTTGAGATTTTTAAATTTGATTTGACTTGGCTAGAGCCACATGTTCAATCTGCCTTAGGAATGAAAAGTTATATAGAAAAAGCTTTGGAAGTGAAAATGATGAAGGAGCATGTGACTGCTTTAGAGATGGAAACAAAGCGGCTAAAGGCAAAGATTGCTGCATCAGAGGTTGATCTGGAAATGGCAAGAAGGGACTTGGCCAAAGCAGAAGAAGGGTTCAAAGAGTTGGATTTAGATGCTGAATTAGGATACGGAGGACCATGA 1014 0.3866 MEDQSTSSKERIEDKFRWTIENFSKFESKKKLYSESFFLDGHSWRILIFPKGNAVKYLSVYLDGEGLANLPYGWSKFANFKLTLINQVNTTMTKAKECEHEFNARESDWGFTTFIPLDEFEDSSNGFIVNDTCIIEAEICIKKSEDENQVDDAVPTQVCAEPINHSDNTTSFGELVDFRGLGKIEKAFVPLLEEVCSLHPSLIDSQQKRSRRFAEWALTALGRVLHFLKVQKAKDMNDEACNHLQILWEELEIFKFDLTWLEPHVQSALGMKSYIEKALEVKMMKEHVTALEMETKRLKAKIAASEVDLEMARRDLAKAEEGFKELDLDAELGYGGP* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0719 337 SUPERFAMILY TRAF domain-like 13 143 - -
Apr8g0719 337 Coils Coil 302 329 - -
Apr8g0719 337 CDD MATH 15 139 IPR002083 GO:0005515
Apr8g0719 337 Pfam MATH domain 20 141 IPR002083 GO:0005515
Apr8g0719 337 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 9 169 IPR008974 GO:0005515
Apr8g0719 337 SMART math_3 15 120 IPR002083 GO:0005515
Apr8g0719 337 ProSiteProfiles MATH/TRAF domain profile. 13 139 IPR002083 GO:0005515
Apr8g0719 337 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 13 320 - -
Apr8g0719 337 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 13 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0719 Apr-Chr8 6939195 6942915 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0719 - - adu:107476101 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0719 8 6939195 6942915 Apr8g0907 8 10028691 10062105 ECH
Apr8g0719 8 6939195 6942915 Apr8g0719 8 6939195 6942915 ECH
Apr4g0421 4 3583340 3585613 Apr8g0719 8 6939195 6942915 PCT