Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0420 ATGGAGAGCCAGCAAGTAAAGGGTGTTGTTGCTGTGGAAAAATTCACATGGAAGGTTGAAGCTTTCTCCAAATTGAAAAACAAGAAAATATCCTCTAAAGCTTTCAAAGTTGGTGGCTATAGATGGAAGATTGTCTTATATCCTAAGGGGAGGGATGTAGAGTATTTGTCCTTGTATATGAAGGTTGCTGATTCTCTAGCACCATATGGTTGGAGCAGATTTGCGTCTTTCAGGTTGGCTCTTATTAATCATGTGGATACCAAGAAGTCAATTGTAAAGGAGACCCAGCAGAAGTTTAATGCTGGAAATAGTGCTTGGGGTTCTTCATCATTCATCCCTCTAAGTGAATTCCATGACCCCACTCAAGGTTATCTTGTGAATGACACTTGTATCATTGAAGCTCAAGTTTCAGTCTCTAAGGTCGCATTTAACATTCCGGACAACTTGGCCACAATTCACAAACCTAATGGTGACCAACCTGGGCTAACAGAAGTGGAAATCGAAGAGCAGGAAATGACACCTTCAGATGTGACCTCAAGTCCCACAAGTACCCATGATTCGAAAAGTGATAATGTAAATGAAGTAGAAGAGCAATTCGTACACTCAGAAGATCAAGAAATGGGACCTAAACAAGTGGAATTTATTCCTAGTGCTCCTCCTATGTATCCTTCTTTATTTAATGAATATGAGGAAGTGATCTTAACCCCTCTAAGTGACCTTATAGATTTCAAGAGTTTAGAGCCAGAAGAAGCATATTTTATTCCATTATGGGAGGAGGTATGTTCATGGCATCCATCACTAGTAGAGAATCAAAAAAGAAGAAGTCCTAGGTTCATATTGTGGGCATTCATAGCCTTAGGCCGAGTGCTACATTTCCTTAAGACTAAGACACTTAGGGATATGGGTAAGGATGATTGTATGATGCACCTTCAAACTCTTTGGGAAGAACTTCAACCCTTTGGATTTGACTTGATATGGTTGGAGCCACATGTTAAATCAGCATTGGGTGCAAAAGCTTATTTGGAAAGAGCTGAGTGCATGAAAAATCTAAGGGTCAATGTAGCTTCATTAGAGATGGAAACGAGGAAGCTGAAGGCAAAGCTCGCAGTTACAGAACTAGACCTTGAGGTTGCAAGGAAAGACTTGGAAGAGGTAGAAAATGGCTTTGAAGAGAGGGACATGGATGCAGAACTGGGTTATGGGGTACCTTAG 1212 0.4076 MESQQVKGVVAVEKFTWKVEAFSKLKNKKISSKAFKVGGYRWKIVLYPKGRDVEYLSLYMKVADSLAPYGWSRFASFRLALINHVDTKKSIVKETQQKFNAGNSAWGSSSFIPLSEFHDPTQGYLVNDTCIIEAQVSVSKVAFNIPDNLATIHKPNGDQPGLTEVEIEEQEMTPSDVTSSPTSTHDSKSDNVNEVEEQFVHSEDQEMGPKQVEFIPSAPPMYPSLFNEYEEVILTPLSDLIDFKSLEPEEAYFIPLWEEVCSWHPSLVENQKRRSPRFILWAFIALGRVLHFLKTKTLRDMGKDDCMMHLQTLWEELQPFGFDLIWLEPHVKSALGAKAYLERAECMKNLRVNVASLEMETRKLKAKLAVTELDLEVARKDLEEVENGFEERDMDAELGYGVP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0420 403 CDD MATH 14 136 IPR002083 GO:0005515
Apr4g0420 403 Pfam MATH domain 20 138 IPR002083 GO:0005515
Apr4g0420 403 MobiDBLite consensus disorder prediction 172 188 - -
Apr4g0420 403 ProSiteProfiles MATH/TRAF domain profile. 12 136 IPR002083 GO:0005515
Apr4g0420 403 Coils Coil 347 388 - -
Apr4g0420 403 MobiDBLite consensus disorder prediction 169 191 - -
Apr4g0420 403 SUPERFAMILY TRAF domain-like 14 144 - -
Apr4g0420 403 SMART math_3 14 117 IPR002083 GO:0005515
Apr4g0420 403 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 12 386 - -
Apr4g0420 403 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 12 386 - -
Apr4g0420 403 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 11 147 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0420 Apr-Chr4 3578697 3580580 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0420 - - gmx:102668441 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0420 4 3578697 3580580 Apr8g0907 8 10028691 10062105 ECH
Apr4g0420 4 3578697 3580580 Apr4g0420 4 3578697 3580580 ECH