Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0046 ATGAGACAATCTCATATTTTACCACTAGCATTATTCTCCTTATATTTTCTTACTTTATTTCTTTCCACCCAAGCTAGGTACCATTTCCATACAAAACACAAGCACTCACACTCTCATAATTCACCTGAAATTTCACCATCTCTAGCCCCAATGCCTCCACCTTCTTTCACTCCTGATGATGCTCCTAGTCCTAGCCCCACTGTTAATGACAACTACCATAATGCAACTAACTTATTTGATGTACGAACATTTGGAGCCATTGGAGATGGAATAAGTGATGATACAGAGCCATTCAAGATGGCTTGGGACACTGCATGCCAAAGTGAATCAGAAGTTAACACTATCCTTGTTCCCCATGGTTTCTCCTTCATTATTCAATCTACTATCTTCACTGGTCCTTGTCAAGCTGGCTTAGTACTAAAGAAGGTTGATGGTACTCTCATGCCACCTGATGGACCAGAATCTTGGCCAAAGAACAATAGTAGGCGTCAGTGGCTTGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTCATGGGACAACATCCCCTGGACCTTGTGACAGCCCGGTTGCCATGAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGACTTAGGATCAAGAACAGCCCTCAGTTCCATTTCAGATTTGATGGATGTCAAAGCGTTCACGTTGAATCAATCTACATAACAGCCCCAGCACTAAGCCCAAATACCGATGGAATACACATAGAAAATACCAATGATGTGAAAATATACAATTCTGTCATTTCTAATGGTGATGATTGCGTGTCCATTGGATCCGGTTGCCATGATGTCGATATTAAGAACATCACATGTGGACCTGGTCATGGGATTAGCATTGGTAGTCTGGGAAATCACAACTCTAGAGCATGTGTTTCAAACATTACGGTGAGGGACTCAGTTATAAAAGTGTCAGATAATGGAGTTAGAATAAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTGACATTCAGTAATATTCACATGGATAGTGTAAGAAATCCCATTATAATTGACCAATTCTACTGCCTCACTAAAGAATGCACCAACAAGACCTCTGCAGTATTCGTATCGGATATAATTTACACAAACATAAAGGGAACGTATGATATAAGGCACCCACCTATGCATTTTGCCTGCAGTGACTCTATCCCATGCACCAACTTGACTCTCTCAGATATTGAGCTTCTTCCAGCTCAAGGAGACATTGTGCTTGATCCTTTCTGTTGGAATGCCTATGGAAATTCTGAGACACTAACTATTCCCCCAGTCTCTTGTTTGCTGGAAGGAATTCCTCAGTCTATTTCTGGCAATGACATAGATCACTGCTGA 1431 0.4158 MRQSHILPLALFSLYFLTLFLSTQARYHFHTKHKHSHSHNSPEISPSLAPMPPPSFTPDDAPSPSPTVNDNYHNATNLFDVRTFGAIGDGISDDTEPFKMAWDTACQSESEVNTILVPHGFSFIIQSTIFTGPCQAGLVLKKVDGTLMPPDGPESWPKNNSRRQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGTTSPGPCDSPVAMRFFMSSNLTVQGLRIKNSPQFHFRFDGCQSVHVESIYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMDSVRNPIIIDQFYCLTKECTNKTSAVFVSDIIYTNIKGTYDIRHPPMHFACSDSIPCTNLTLSDIELLPAQGDIVLDPFCWNAYGNSETLTIPPVSCLLEGIPQSISGNDIDHC* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0046 476 Gene3D - 63 462 IPR012334 -
Apr8g0046 476 MobiDBLite consensus disorder prediction 46 61 - -
Apr8g0046 476 PANTHER - 10 466 - -
Apr8g0046 476 MobiDBLite consensus disorder prediction 33 70 - -
Apr8g0046 476 ProSitePatterns Polygalacturonase active site. 300 313 IPR000743 GO:0004650|GO:0005975
Apr8g0046 476 SMART pbh1 270 291 IPR006626 -
Apr8g0046 476 SMART pbh1 323 344 IPR006626 -
Apr8g0046 476 SMART pbh1 352 373 IPR006626 -
Apr8g0046 476 SMART pbh1 243 269 IPR006626 -
Apr8g0046 476 SMART pbh1 293 313 IPR006626 -
Apr8g0046 476 Pfam Glycosyl hydrolases family 28 110 429 IPR000743 GO:0004650|GO:0005975
Apr8g0046 476 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 10 466 - -
Apr8g0046 476 SUPERFAMILY Pectin lyase-like 75 464 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0046 Apr-Chr8 380464 382389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0046 78 476 Glycoside Hydrolase AT1G02460 73.632 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0046 - - gmx:100792285 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0046 8 380464 382389 Apr8g0046 8 380464 382389 ECH
Apr1g2025 1 29727672 29731319 Apr8g0046 8 380464 382389 ECH
Apr4g0573 4 4763254 4765816 Apr8g0046 8 380464 382389 PCT