Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0573 ATGAAACATTCTCATATTTTACCACTAGTATTCTGTATATTTTTCCTTACTTTAATTATTGTCCAAGCTAGGCATCATTCCCATGCAAAACACAAGCATTCACATTCTCATAAATCATCTGAAATTCCACAACCTCCTGCTCCACAGCCTGCACCTCCTCATAACAAGAACTATTACAATGCCTCTGGTATTTTTGATGTACGAAAGTTTGGAGCAATAGGAGATGGAATAACAGATGATACAGAGCCATTCAAGATGGCATGGGACACTGCATGCCAAAGTGAATCAGCAGTTAATGTTATCCTTGTTCCTCAAGGTTTCTCCTTTATTATTCAATCTACCATCTTCACAGGTCCTTGTCAAGGAGGCTTAGTATTGAAGGTAGATGGCACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAATAGTAGGCACCAATGGTTGGTTTTTTATAGAATTAATGGAATGTCACTGGAAGGTGGTGGGTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCCTGTAAGCCTCACCGGGGATCTGGTGGGACAACATACCCAGGACTTTGTGATAGCCCAATTGCCATAAGGTTTTTTATGAGTTCCAACTTGACTGTGCAAGGACTTAGGATAAAGAACAGCCCTCAATTCCATTTCAGATTTGATGGCTGCAGAAACGTCCACGTAGAATCAATCTACATAACAGCTCCAAAACTAAGCCCCAATACTGATGGAATTCACATAGAAAATACCAATGACGTGAAAATATATAATTCTGTGATTTCTAATGGTGATGACTGTGTATCCATTGGTTCCGGATGCTATGATGTCGATATAAAGAACATTACCTGTGGACCTGGTCATGGAATTAGTATTGGTAGTCTGGGAAATCACAACTCTAGAGCCTGTGTTTCAAACATTACGGTGAGAGACTCGTTGATAAAAGTGTCAGATAATGGAGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCTGTATCTGGAGTGACATTCAGTAACATTCACATGAGCAGTGTAAGAAATCCCATCATAATTGACCAGTTCTACTGCCTCACTAAGGATTGCACCAACAAGACCTCTGCAGTATTTGTATCAAATATTCTCTACAAAAACATCAAGGGAACCTATGATATAAGGAGCCCTCCTATGCGTTTTGCCTGCAGTGACTCCGTTCCATGCACCAACTTAACACTCTCAGATATTGAGCTCCTTCCAGCACAAGGTTATCTAGTGCATGATCCTTTCTGTTGGAATGCTTATGGAGATTTGCTCACACTAACCATTCCACCAGTCTCTTGCTTGTTGGAGGGCACTCCTCAGTCCGTGTTAGACTATGACATAACTCTTTGCTGA 1386 0.4127 MKHSHILPLVFCIFFLTLIIVQARHHSHAKHKHSHSHKSSEIPQPPAPQPAPPHNKNYYNASGIFDVRKFGAIGDGITDDTEPFKMAWDTACQSESAVNVILVPQGFSFIIQSTIFTGPCQGGLVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGGGLIDGRGEKWWDLPCKPHRGSGGTTYPGLCDSPIAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCRNVHVESIYITAPKLSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSLIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMSSVRNPIIIDQFYCLTKDCTNKTSAVFVSNILYKNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPAQGYLVHDPFCWNAYGDLLTLTIPPVSCLLEGTPQSVLDYDITLC* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0573 461 ProSitePatterns Polygalacturonase active site. 285 298 IPR000743 GO:0004650|GO:0005975
Apr4g0573 461 PANTHER - 7 451 - -
Apr4g0573 461 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 451 - -
Apr4g0573 461 MobiDBLite consensus disorder prediction 29 55 - -
Apr4g0573 461 Pfam Glycosyl hydrolases family 28 92 414 IPR000743 GO:0004650|GO:0005975
Apr4g0573 461 Gene3D - 51 444 IPR012334 -
Apr4g0573 461 SUPERFAMILY Pectin lyase-like 61 451 IPR011050 -
Apr4g0573 461 SMART pbh1 337 358 IPR006626 -
Apr4g0573 461 SMART pbh1 228 254 IPR006626 -
Apr4g0573 461 SMART pbh1 278 298 IPR006626 -
Apr4g0573 461 SMART pbh1 308 329 IPR006626 -
Apr4g0573 461 SMART pbh1 255 276 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0573 Apr-Chr4 4763254 4765816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0573 62 453 Glycoside Hydrolase AT1G02460 74.430 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0573 - - gmx:100778836 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0573 4 4763254 4765816 Apr8g0046 8 380464 382389 PCT