Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2025 ATGAGACTAACAATGAGTCTCATTCATTGGTCTTTTATCCTTTGGATTACCATGATTCTTTTTATCCAAAATTTGGATAATGTGGAAGGAAGATACCACAATCACAAGAGGCAGAAGAAAAATTCCCCTGCTCCTAAGCCTCCTGCTAATCCACCTACACCAGAGGATCCACCTTCACCCCCTTCCAATCCTCCTAGTGTTCCCTCTGACCCTTCTCCAATTGATCCGGGGGATTCACCTTCAAACTGCATTTTCGATGTAAGATCCTTTGGTGCAGTTGGAGATGGTTCTTCTGATGACACTGCTGCATTCAGAGAAGCATGGAAAGCTGCTTGTGCAGTAGAGTCAGGGGTTGTTCTTGTTCCAGAAAATTACTGCTTTATGATCACTTCAACAATTTTTTCAGGTCCATGCAAGCCAGGACTAGTATTTCAGGTGGATGGTACTCTCATGGCACCAGATGGACCAGAATGTTGGCCTAAGGAAGATAGCCGCAATCAATGGCTTGTGTTTTATCGACTTGATCAAATGACTCTTAATGGGACAGGAATCATAGAAGGCAATGGAGAACAGTGGTGGGATCTACCTTGCAAACCTCACAGGGGTCCCGATGGAAATACTAAATCAGGACCATGTGACAGCCCTACAATGATACGGTTCTTCATGAGCTCCAATTTGATGCTGAGTGGGGTGAAAATTCAAAACAGTCCTATGTTCCACGTGAAATTCGATGGTTGCCAAGGAGTGCTGATTGATAAGTTGTCCATTTCTTCGCCTAAACTCAGTCCCAATACTGATGGAATTCACTTAGGAAACACAAAGGGTGTCGGGATATATAACACCATGATAAGCAATGGTGATGACTGCATTTCAATTGGACCCGGGTGCTCAGATGTGGACATAGAGGGTGTAACTTGTGCTCCTACCCACGGAATTAGCATTGGAAGCCTTGGAGTGCACAATTCCCAGGCATGTGTCTCCAACTTAACTGTTCGAAACACAATCATAAAGGAATCAGATAATGGTCTTAGGATTAAGACATGGCAAGGTGGTACTGGCTCAGTGACAGGCTTAAGATTTGAGGACATCCAAATGGAGAATGTCAGAAATTGCATCATTATTGACCAATACTATTGCTTGTCCAAGGAGTGTCTGAATCAGACTTCAGCTGTACATGTAAATGATGTGTCATATAGGAACATAAAGGGTACTTATGATGTAAGAACCCCTCCTATACACTTTGCATGCAGTGACACTGTGGCTTGCACAAACATAACACTCTCTGAGATTGAGCTTTTGCCATTTGAAGGAGAATTGCTAGATGACCCTTTTTGCTGGAATGCTTATGGAACTCAAGAGACCATGACTATACCTCCACTTAATTGCTTAAGAGAAGGTTATCCTGATACAATGGGGGAGCTATCTGGATATGAATGTAGAAATTAA 1446 0.4288 MRLTMSLIHWSFILWITMILFIQNLDNVEGRYHNHKRQKKNSPAPKPPANPPTPEDPPSPPSNPPSVPSDPSPIDPGDSPSNCIFDVRSFGAVGDGSSDDTAAFREAWKAACAVESGVVLVPENYCFMITSTIFSGPCKPGLVFQVDGTLMAPDGPECWPKEDSRNQWLVFYRLDQMTLNGTGIIEGNGEQWWDLPCKPHRGPDGNTKSGPCDSPTMIRFFMSSNLMLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTKGVGIYNTMISNGDDCISIGPGCSDVDIEGVTCAPTHGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVTGLRFEDIQMENVRNCIIIDQYYCLSKECLNQTSAVHVNDVSYRNIKGTYDVRTPPIHFACSDTVACTNITLSEIELLPFEGELLDDPFCWNAYGTQETMTIPPLNCLREGYPDTMGELSGYECRN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2025 481 MobiDBLite consensus disorder prediction 44 75 - -
Apr1g2025 481 MobiDBLite consensus disorder prediction 33 78 - -
Apr1g2025 481 SMART pbh1 326 347 IPR006626 -
Apr1g2025 481 SMART pbh1 296 316 IPR006626 -
Apr1g2025 481 SMART pbh1 273 294 IPR006626 -
Apr1g2025 481 SMART pbh1 355 376 IPR006626 -
Apr1g2025 481 SMART pbh1 246 272 IPR006626 -
Apr1g2025 481 Gene3D - 77 465 IPR012334 -
Apr1g2025 481 PANTHER POLYGALACTURONASE PLANT-LIKE PROTEIN 8 470 - -
Apr1g2025 481 Pfam Glycosyl hydrolases family 28 119 432 IPR000743 GO:0004650|GO:0005975
Apr1g2025 481 PANTHER - 8 470 - -
Apr1g2025 481 SUPERFAMILY Pectin lyase-like 82 478 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2025 Apr-Chr1 29727672 29731319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2025 13 468 Glycoside Hydrolase AT1G48100 71.491 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2025 - - gmx:100785528 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2025 1 29727672 29731319 Apr1g2025 1 29727672 29731319 ECH
Apr1g2025 1 29727672 29731319 Apr8g0046 8 380464 382389 ECH