Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1464 ATGGCATCAACCATTCTCCAACTCACTTCATTTTCTCCCACAAAACCCAACACAGAAGCCCCAAAACACGAAGCCACTTCACTCGCACATGAACCATTACCTTCCCTTCTTTCTCTCATACCCAAATGCACCTCTCTTAGAGAGCTCAAGCAAATTCAAGCTTACACCATCAAAACCCACCTTCATAACAACACCACTGTCCTCACAAAGCTTATAAATTTCTGCACTTCCAACCCTACAACGGCTTCAATGGACCACGCCCACCAAATGTTTGATCAAATTCCTCAACCAGACATTGTCGTTTTCAACACCATGGCACGTGGGTATGCACGATTTAATGAGCCAGTTAGAGCAATTATTTTGTTTTCTCGAGTGTTTCACTATGGCCTCCTTCCAGATGATTACTCTTTCTCCTCTCTTCTCAAGGCTTGTGCAAGGATCAAGGCACTTCAGGAAGGTAAACAACTGCATTGCCTTGCTGTTAAACTCGGAGTCAGTGATAATGTGTATGTGCGTCCAACACTCATAAACATGTACACTGCCTGCAATGACATGGATGCTGCTAGAAGGGTCTTTGATAAGATTGACGAGCCTTGTGTTGTCGCTTATAATGCAATCATCACGAGTTATGCTCGGAGTAGTCAGCCCAATGAGGCCTTAGCTTTGTTTAGAGAATTGCAAGAGAGTGGTCTTAAGCCAACTGATGTGACCATGCTTGTTGCGCTTTCATCCTGTGCATTGCTAGGGTCGTTGGACTTGGGAAGGTGGATCCATGAGTATGTCAAGAAGAATGGGTTTGATCAATATGTAAAGGTGAATACTGCACTAATAGATATGTACGCTAAATGTGGGAGTTTGGATGATGCCGTTTCTGTGTTTAGGGACATGCCTAGGAGAGACACTCAGGCATGGTCGGCAATGATTGTTGCTTATGCAACACATGGGCATGGTTCACAAGCCATATCCATGTTGGAAGAAATGAAGGCTGCAAAAGTGCAGCCTGATGAGATAACTTTTATTGGTATATTGTATGCATGTAGTCACAATGGATTGGTTGAGGAAGGTAATGAGTACTTCCATAGTATGACTCATGAGTATGGAATTGTTCCTAGTATCAAGCATTACGGGTGTATGGTGGATTTGCTTGGTCGAGCTGGGCACTTGGAAGAAGCCTATAGATTCATAGATGAGTTGCCAATTAAGCCAACACCAATTTTTTGGCGGACATTGCTATCTGCTTGTAGCAGTCATGGCAATATTGAAATGGGAAAACAAGTAATGCAGAGAATCATTGAATTGGATGATTCCCATGGTGGGGATTATGTCATTTTGTCAAACTTGTGTGCGAGACATGGAAGATGGGATGATGTGAATTACTTGAGGAAAATGATGATAGACAAAGGAGCAGCAAAAATCCCTGGCTGTAGCTCAATAGAGGTCAACAATGTTGTGCATGAATTCTTTGCTGGGGATGGAGTTCATTCCACTTCTACCAAATTGCACGGAGCTCTTGATGAGTTGGTAAAGGAATTGAAGCTGGCTGGGTATGTACCTGACACATCTCTGGTCTTTTATGCAGACATAGAAGAAGAAGAGAAAGAAATTATTCTTAGATATCACAGTGAGAAATTGGCCATTACTTTTGGTCTTCTGAATACTCCCCCCGGAACGACAATTCGTGTGGTCAAGAACCTTAGAGTCTGTGGTGATTGCCATAATGCTGCTAAATTTATATCATTGATCTTTGGTAGGCAAATTATTCTGAGAGATGTCCAGCGATTTCATCATTTCAAAGATGGGAAATGCTCCTGTGGGGATTACTGGTAG 1827 0.4264 MASTILQLTSFSPTKPNTEAPKHEATSLAHEPLPSLLSLIPKCTSLRELKQIQAYTIKTHLHNNTTVLTKLINFCTSNPTTASMDHAHQMFDQIPQPDIVVFNTMARGYARFNEPVRAIILFSRVFHYGLLPDDYSFSSLLKACARIKALQEGKQLHCLAVKLGVSDNVYVRPTLINMYTACNDMDAARRVFDKIDEPCVVAYNAIITSYARSSQPNEALALFRELQESGLKPTDVTMLVALSSCALLGSLDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFRDMPRRDTQAWSAMIVAYATHGHGSQAISMLEEMKAAKVQPDEITFIGILYACSHNGLVEEGNEYFHSMTHEYGIVPSIKHYGCMVDLLGRAGHLEEAYRFIDELPIKPTPIFWRTLLSACSSHGNIEMGKQVMQRIIELDDSHGGDYVILSNLCARHGRWDDVNYLRKMMIDKGAAKIPGCSSIEVNNVVHEFFAGDGVHSTSTKLHGALDELVKELKLAGYVPDTSLVFYADIEEEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1464 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Apr7g1464 608 Gene3D Tetratricopeptide repeat domain 197 264 IPR011990 GO:0005515
Apr7g1464 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Apr7g1464 608 MobiDBLite consensus disorder prediction 1 28 - -
Apr7g1464 608 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 27 594 - -
Apr7g1464 608 PANTHER BNAA02G26650D PROTEIN 27 594 - -
Apr7g1464 608 Pfam DYW family of nucleic acid deaminases 515 608 IPR032867 GO:0008270
Apr7g1464 608 Gene3D Tetratricopeptide repeat domain 271 503 IPR011990 GO:0005515
Apr7g1464 608 Gene3D Tetratricopeptide repeat domain 33 196 IPR011990 GO:0005515
Apr7g1464 608 Pfam PPR repeat 274 299 IPR002885 -
Apr7g1464 608 Pfam PPR repeat 375 398 IPR002885 -
Apr7g1464 608 Pfam PPR repeat 100 124 IPR002885 -
Apr7g1464 608 SUPERFAMILY TPR-like 268 437 IPR011990 GO:0005515
Apr7g1464 608 MobiDBLite consensus disorder prediction 1 21 - -
Apr7g1464 608 Pfam PPR repeat family 300 346 IPR002885 -
Apr7g1464 608 Pfam PPR repeat family 198 245 IPR002885 -
Apr7g1464 608 SUPERFAMILY TPR-like 151 294 IPR011990 GO:0005515
Apr7g1464 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Apr7g1464 608 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Apr7g1464 608 TIGRFAM PPR: pentatricopeptide repeat domain 274 300 IPR002885 -
Apr7g1464 608 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Apr7g1464 608 TIGRFAM PPR: pentatricopeptide repeat domain 201 234 IPR002885 -
Apr7g1464 608 Pfam E motif 417 479 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1464 Apr-Chr7 21739530 21741842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1464 35 608 Glycoside Hydrolase AT3G49170 39.003 3.30e-141 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1464 - - gmx:100817794 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1464 7 21739530 21741842 Apr7g1464 7 21739530 21741842 ECH
Apr7g1464 7 21739530 21741842 Apr9g3001 9 36848184 36851289 PCT
Apr3g0861 3 22518894 22521191 Apr7g1464 7 21739530 21741842 PCT