Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3001 ATGCTTCTGCTTTGGTTCTCACGAAACATTTCCTCTTACCCTAACCGATCCCTTCTTTCTGCACCCAATCCACAATCTCCATCTCTTTCTCTCTCTTCCACCATTGCCATTCATCTCCTTCACTACAACACCGTTCCCTTACCACGTCCACACCACAAACAAATCCAACAAACAAACAAAGAACCCGTTATTTCTGCCATCAAATCTGTTTCCCGTAAGACCGATTTGCTCCAAATTCACGCTCACATTCTACTCTCAACCCTAATTCAAGACCCCGCAGTCTCTCTTCAGTTCTTGTCCCGTGTAGCTCTCTCTGGTCCATTGCAAGATGCCAACTATTCCCACCGTTTCTTTGAGCAACTCAACTACCCTTTGGCTTCCCATTACAACACTATGATCAGGGCCTATTCCATGAGCGATTCACCTCAAAAGGGTCTACTTTTATATCGAGATATGAGAAGACAAGGCATTTTTGCCAACCCTTTATCGTCTTCCTTTGCTGTTAAGTCCTGTATCAGGTTTCTGTATCTTCTTGGGGGGGTTCAGGTTCATTGCAACGTCTTCAAAGATGGGCACCAATCAGATACCCTTTTGCTCACCTCTGTTATGGATTTGTATTCACAATGCCAAAGAGGTGGTGATGCGTGTAAGGTGTTTGATGAAATGCCTCAGAGGGACACTGTTGCTTGGAATGTGATGATCTCTTGCTGTATTCGGAATAATCGAACCCGGGATGCTTTAAGTTTGTTTGATGTTATGCAGAGTTCGAGCTATAAATGTGTGCCTGATGATGTTACTTGTTTACTTCTTCTTCAGGCTTGTGCTCATTTGAATGCCTTGGAGTTTGGGGAACGAATTCATGGCTATATTATGGAACGGGGTTATGGGGGTGCTCTCAATTTGTCTAATTCTCTCGTATCTATGTATTCACGGTGTGGATGTTTAGATAAGGCTTATGAGGTGTTTAAGGGAACGGTGAATAAAAATGTGGTTTCATGGAGTGCAATGATCTCTGGTTTGGCAATGAATGGATATGGAAGAGAAGCTATTGAAGTATTTGAAGAGATGTTGAGAATTGGCTTTCGGCCTGATGATCAGACATTCACTGTTGTGCTTTCTGCTTGCAGTCATTCTGGATTGATCGATGAGGGAATGTCAGTTTTTGATCGTATGAGCAGAGAGTTTGGAATAACTCCCAATGTTCATCATTATGGGTGTATGGTTGATCTCTTTGGCCGTGCTGGCTTACTTGATAAGGCTTATGAGCTCGTTATATCAATGGTGGTAAAGCCAGATTCCACAGTATGGAGGACTTTGCTTGGGGCTTGCAGAATTCATGGTCATGTTACACTTGGTGAACGAGTGATTGGACATTTGATTGAATTGAAAGCTCAAGAAGCTGGGGATTATGTTTTGCTCCTAAATATTTATTCTTCAGCTGGACATTGGGAAAAGGTAGCTGAAGTGAGAAAACTAATGAAAGATAAAGCAATCCAAACCACACCTGGCTGTAGCACAATTGAATTGAAAGGAGTAGTACACGAGTTTGTCGTGGATGACGTTTCGCATTCAAGAAAAACTGAGATTTATGAGACACTGGATGAGATTAATAAGCAGCTAAAGATTGCTGGTTATGTTGTTGAACTTTCATCTGAGTTACATAAGATGGATGACAAAGAAAAGGGGTATGTGCTCTCTTATCACAGTGAAAAACTGGCAATTGCATTTGGGGTTCTTGCTACTCCACCTGGTACAAGACTGAGAGTGGCCAGCAATCTCCGTATATGTGTTGATTGCCACAATTTTCTGAAACTCTTTTCCGGGGTTTACAATCGTGATGTAATTCTTAGGGACCATAATCGATTTCACCACTTTAGGGGAGGGCACTGCTCATGTAGCGACTATTGGTAG 1911 0.4233 MLLLWFSRNISSYPNRSLLSAPNPQSPSLSLSSTIAIHLLHYNTVPLPRPHHKQIQQTNKEPVISAIKSVSRKTDLLQIHAHILLSTLIQDPAVSLQFLSRVALSGPLQDANYSHRFFEQLNYPLASHYNTMIRAYSMSDSPQKGLLLYRDMRRQGIFANPLSSSFAVKSCIRFLYLLGGVQVHCNVFKDGHQSDTLLLTSVMDLYSQCQRGGDACKVFDEMPQRDTVAWNVMISCCIRNNRTRDALSLFDVMQSSSYKCVPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYGGALNLSNSLVSMYSRCGCLDKAYEVFKGTVNKNVVSWSAMISGLAMNGYGREAIEVFEEMLRIGFRPDDQTFTVVLSACSHSGLIDEGMSVFDRMSREFGITPNVHHYGCMVDLFGRAGLLDKAYELVISMVVKPDSTVWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKDKAIQTTPGCSTIELKGVVHEFVVDDVSHSRKTEIYETLDEINKQLKIAGYVVELSSELHKMDDKEKGYVLSYHSEKLAIAFGVLATPPGTRLRVASNLRICVDCHNFLKLFSGVYNRDVILRDHNRFHHFRGGHCSCSDYW* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3001 636 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 56 628 - -
Apr9g3001 636 Gene3D Tetratricopeptide repeat domain 301 539 IPR011990 GO:0005515
Apr9g3001 636 Gene3D Tetratricopeptide repeat domain 114 296 IPR011990 GO:0005515
Apr9g3001 636 Pfam DYW family of nucleic acid deaminases 544 636 IPR032867 GO:0008270
Apr9g3001 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Apr9g3001 636 Pfam PPR repeat 396 428 IPR002885 -
Apr9g3001 636 TIGRFAM PPR: pentatricopeptide repeat domain 367 401 IPR002885 -
Apr9g3001 636 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
Apr9g3001 636 TIGRFAM PPR: pentatricopeptide repeat domain 228 263 IPR002885 -
Apr9g3001 636 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Apr9g3001 636 PANTHER OS08G0434000 PROTEIN 56 628 - -
Apr9g3001 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Apr9g3001 636 Pfam E motif 446 508 IPR046848 -
Apr9g3001 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Apr9g3001 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 399 IPR002885 -
Apr9g3001 636 Pfam PPR repeat family 328 376 IPR002885 -
Apr9g3001 636 Pfam PPR repeat family 226 275 IPR002885 -
Apr9g3001 636 Pfam PPR repeat 303 323 IPR002885 -
Apr9g3001 636 Pfam PPR repeat 200 225 IPR002885 -
Apr9g3001 636 Pfam PPR repeat 128 157 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3001 Apr-Chr9 36848184 36851289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3001 78 636 Glycoside Hydrolase AT3G49170 34.629 7.25e-116 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3001 - - lja:Lj0g3v0169319.1 1061.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3001 9 36848184 36851289 Apr9g3001 9 36848184 36851289 ECH
Apr7g1464 7 21739530 21741842 Apr9g3001 9 36848184 36851289 PCT