Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0861 ATGGCCACAAGCCCTCCTCCTCTGCTTGTCTCTACCAACATAACCACCACCAACCACCATGATCAACACTTTAGCCACACGCGCCTTATCCACTTGTTAAACCAATCTATTGGTATGGCTCAGCTTAAACAAATTCATGCCCAAGCGCTACGCACAATTGACGCTGACCATCCACAAGCTCTCTTTCTTTATAGCAGAATTCTTCATTATACTTCTCTTTCTGATCTCACCTACGCTACTCGTGTATTTCACCACTTCTCTAAGCCCAATTCCTTCATGTGGAACACTCTCATACGAGCCTACGCGCGAAGCACCAACCACAAAGACCACGCATTTGAGCTTTACAATGCAATGATGATGGTGGAAGAAGAAAGTGCTGTTCCCGATAATCACACCTTCCCGTTTGTTCTTAAGGCTTGTGCTTACACTTTTTCTCTCTGTAAAGGAAAACAGGTGCATGCCCACGTTTTTAAACATGGGTTTGAGTCAGATACACACATTTGTAACAGTTTGATTCATTTTTATGCGACATGTGGGTGTTTAGATTTGGCACAGAAACTTTTTCAGAAGAGGTTTGAGAAAAACGAGGTTTCATGGAACATTATGATTGATTCTTATGTAAGGGTTGGTGAGTTTGACGCTGCTTTGAAAATGTTTGGTGGGATGCAGAAGGTGCATGATCCTGATGGTTATACAATGCAGAGTGTCGTTAATGCTTGTGCTGGTTTGGGTGCTTTGTCGTTGGGTTTGTGGGCACATGCTTATCTTCTGAAAAAGTGTGCGAAGAGTGTGATTGATGATGTTTTGGTGAACACTTGTTTGGTGGATATGTATTGCAAATGTGGGTTCCTGGTAATGGCTCAGCAGGTCTTCGAAAGCATGAAATATAGAGAGGTAAATTCATGGAATTCAATGATCTTGGGGTTTGCAATGCATGGTAAGGCTGAGGCTGCATTGGAGTATTATAACCGAATGGTGAAGGTGGAAAATTGTGTGCCAAATTCTATCACTTTTGTTGGTGTATTGAGTGCTTGTAACCATAGGGGCATGGTTGAAGAGGGGCTTGTGTATTTTGACATGATGACTAAGGAGTACAATATTGAACCAAGGTTAGAACATTATGGATGTCTAGTTGATCTTTTTGCTCGAGCTGGGAGAATTGAAGAGGCTCTAAACTTGGTATCAGAAATGCCAATCAAACCGGATGCTGTTATATGGAGGAGTCTTTTGGATGGTTGTTGCAAGCAACATGCAAGTGTTGAGTTAAGTGAAGAAATGGCAAAGCAGGTGTTTGAGTCAGAGGGGACTATTTGTAGTGGTGCTTATGTGCTTTTGTCAAAAGTCTATGCTTCAGCTAGTAGGTGGAATGATGTTGGATTGCTTAGAAAATTAATGACTGATAAGGGTGTGACTAAAGAGCCTGGTTGCAGTTTAATAGAGATAGATGGAGTGATTCATGAATTTTTTGCTGGGGATACCACTCATCCCCAGAGTGAAAATATATATTTGTTTATGAATGAAATTGAGGAGAAGCTAGAATCAATAGGGTATTTACCTGACTACACAGGGGCACCTTTGGTAGATGAGATTAATAATGGGAAAAAGAATAGTCTAAGGTTGCATAGTGAGAGATTGGCCATAGCTTTCGGAATCTTGAACTCAAGACCTGGCATGCCAATAAGAGTGTATAAGAATTTAAGGGTGTGTAATGATTGCCACAAGGTTACTAAATTAATCTCCAGAATTTACAATGTGGAGATAATTGTAAGGGATCGTGCTCGATTCCATCACTTTAAAGACGGTACCTGTTCTTGTAGGGATTATTGGTGA 1830 0.4104 MATSPPPLLVSTNITTTNHHDQHFSHTRLIHLLNQSIGMAQLKQIHAQALRTIDADHPQALFLYSRILHYTSLSDLTYATRVFHHFSKPNSFMWNTLIRAYARSTNHKDHAFELYNAMMMVEEESAVPDNHTFPFVLKACAYTFSLCKGKQVHAHVFKHGFESDTHICNSLIHFYATCGCLDLAQKLFQKRFEKNEVSWNIMIDSYVRVGEFDAALKMFGGMQKVHDPDGYTMQSVVNACAGLGALSLGLWAHAYLLKKCAKSVIDDVLVNTCLVDMYCKCGFLVMAQQVFESMKYREVNSWNSMILGFAMHGKAEAALEYYNRMVKVENCVPNSITFVGVLSACNHRGMVEEGLVYFDMMTKEYNIEPRLEHYGCLVDLFARAGRIEEALNLVSEMPIKPDAVIWRSLLDGCCKQHASVELSEEMAKQVFESEGTICSGAYVLLSKVYASASRWNDVGLLRKLMTDKGVTKEPGCSLIEIDGVIHEFFAGDTTHPQSENIYLFMNEIEEKLESIGYLPDYTGAPLVDEINNGKKNSLRLHSERLAIAFGILNSRPGMPIRVYKNLRVCNDCHKVTKLISRIYNVEIIVRDRARFHHFKDGTCSCRDYW* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0861 609 Pfam PPR repeat family 194 241 IPR002885 -
Apr3g0861 609 Pfam PPR repeat family 299 345 IPR002885 -
Apr3g0861 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 125 IPR002885 -
Apr3g0861 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 225 IPR002885 -
Apr3g0861 609 Pfam E motif 417 480 IPR046848 -
Apr3g0861 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 333 IPR002885 -
Apr3g0861 609 Gene3D Tetratricopeptide repeat domain 272 482 IPR011990 GO:0005515
Apr3g0861 609 PANTHER OS01G0913400 PROTEIN-RELATED 22 551 - -
Apr3g0861 609 TIGRFAM PPR: pentatricopeptide repeat domain 374 397 IPR002885 -
Apr3g0861 609 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Apr3g0861 609 TIGRFAM PPR: pentatricopeptide repeat domain 197 224 IPR002885 -
Apr3g0861 609 TIGRFAM PPR: pentatricopeptide repeat domain 93 119 IPR002885 -
Apr3g0861 609 Pfam DYW family of nucleic acid deaminases 527 609 IPR032867 GO:0008270
Apr3g0861 609 PANTHER BNAC04G18690D PROTEIN 22 551 - -
Apr3g0861 609 Gene3D Tetratricopeptide repeat domain 151 247 IPR011990 GO:0005515
Apr3g0861 609 Gene3D Tetratricopeptide repeat domain 39 150 IPR011990 GO:0005515
Apr3g0861 609 Pfam PPR repeat 168 190 IPR002885 -
Apr3g0861 609 Pfam PPR repeat 373 397 IPR002885 -
Apr3g0861 609 Pfam PPR repeat 92 107 IPR002885 -
Apr3g0861 609 Pfam PPR repeat 272 297 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0861 Apr-Chr3 22518894 22521191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0861 31 609 Glycoside Hydrolase AT3G49170 35.204 6.81e-120 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0861 - - gmx:100791183 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0861 3 22518894 22521191 Apr3g0861 3 22518894 22521191 ECH
Apr3g0861 3 22518894 22521191 Apr7g1464 7 21739530 21741842 PCT