Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0642 ATGGAAGGCGAAGGAGAAGTGTCAGCAGAAAATAAGCAGAAAGGAAGGTTCCAAAGAATATGTGTTTTTTGTGGTAGTAGAGCTGGATACAAGTCTGCATTTAGTGATGCAGCTCTTGAGCTTGGTAAATTGCTGGTTGAGAGGAGGATTGATTTGGTTTATGGAGGAGGAAGATTAGGACTAATGGGTTTGATCTCTCAAACCGTGCTAAAGGGAGGTCGCCATGTTCTTGGTGTGATTCCTAGAGCTCTATTGCCTCATGAGATATCTGGGGAAACATTTGGAGAAGTGAAAACAGTTGCAGATATGCATGAAAGGAAGTCACTGATGGCTAAACATGCTGATGCATTCATAGCCCTTCCCGGAGGTTATGGTACCATGGAAGAGTTGCTAGAGGTGATAGCCTGGTCCCAACTAGGAATACATGACAAACCTGTGGGATTGTTGAATGTAGATGGGTATTTCAACAGCTTGCTGACCTTATTTGACAAGGGAGTGGAAGAGGGTTTTATAGACAACTCTGCAAGGCATATTGTAGTCATAGCAGACACAGCAGCAGAACTCATAAAGAAAATGGAGGAATATGTACCCAACCATCACAAGGTTGCTCCAAGAAAAAGTTGGGCAATGGACCAATTATTATTAGAGCCAACTGAAACTGGAGAGATAGTAAGATCATAG 681 0.4273 MEGEGEVSAENKQKGRFQRICVFCGSRAGYKSAFSDAALELGKLLVERRIDLVYGGGRLGLMGLISQTVLKGGRHVLGVIPRALLPHEISGETFGEVKTVADMHERKSLMAKHADAFIALPGGYGTMEELLEVIAWSQLGIHDKPVGLLNVDGYFNSLLTLFDKGVEEGFIDNSARHIVVIADTAAELIKKMEEYVPNHHKVAPRKSWAMDQLLLEPTETGEIVRS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0642 226 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG4-RELATED 9 214 - -
Apr5g0642 226 PANTHER LOG FAMILY PROTEIN YJL055W 9 214 - -
Apr5g0642 226 SUPERFAMILY MCP/YpsA-like 17 195 - -
Apr5g0642 226 Gene3D - 6 194 - -
Apr5g0642 226 Pfam Possible lysine decarboxylase 62 192 IPR031100 -
Apr5g0642 226 TIGRFAM TIGR00730: TIGR00730 family protein 19 195 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0642 Apr-Chr5 8810662 8812129 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0642 K22522 - gmx:100811032 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0805 2 11410595 11412216 Apr5g0642 5 8810662 8812129 ECH
Apr4g0197 4 1612657 1616568 Apr5g0642 5 8810662 8812129 ECH
Apr8g0489 8 4229899 4234309 Apr5g0642 5 8810662 8812129 ECH
Apr5g0642 5 8810662 8812129 Apr5g0642 5 8810662 8812129 ECH