Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2208 ATGGCAGCAGCAACAAAAAGGCTTGCAGTTGTCACTGGTGCAAACAAAGGGATTGGATTTGAGATATGCAAGCAATTGGCTTCTAAGGGGATAACAGTGGTGCTAACAGCAAGGGATGAGAAAAGGGGTCTTGAAGCTGTTGAAAAATTGAAAGAATCTGGTCTTTCTGACCATGTGGTTTTTCATCAGCTTGATGTGACTGACCCTAAAAGCATTGAATCGCTTGCGAATTTCATCAAAACCCAGTTTGGAAAACTTGATATCTTGGTGAATAATGCTGGAATTCATGGAGCAGATGTAGATGGTGAAGCCTTTTCAGCTTTAGTTGCTGCTGGGGTACCAATTGCCAATGCTGAATGGAGAAAAGCTATAACTCAAAACTATGAATCTGCAGAAGCAGGCATTAGAGCAAACTACTATGGTGCCAAAGGAACGTGTGAAGCACTTATTCCTCTTCTAGAATTGTCAGACTCGCCAAGGATTGTTAATGTTTCCTCCTCCATGGGGAAGTTAGAGGAAATACCAAATGAATGGGCTAGAGGAGCCCTAAGTGATGTTGAAAGCCTAACAGAAGAAAAGGTGGATGAGGTTTTGAATCAATTTCTAAAAGATTTTAAAGAGGGTTTATTAGAAAGCAAAGGGTGGCCTTCTTTTTTATCTGCATATGCAGTTTCAAAAGCTGCTTTGAGTGCATACACAAGGATTCTTGCCAAAAAGTACCCATCTTTCTGCATTAATGCTGTTTGCCCTGGCTTTGTGAAAACAGATCTCAACTACAACAATGGCTATATTAGTGTTGATGAAGGTGCTGAAAGTGTTGTAAGGTTGGCTCTGCTACCTGATGGAGGTCCTTCTGGTCTCTTCTTTTTTCGAAGTGAAGTGGCTCCATTTTGA 894 0.4116 MAAATKRLAVVTGANKGIGFEICKQLASKGITVVLTARDEKRGLEAVEKLKESGLSDHVVFHQLDVTDPKSIESLANFIKTQFGKLDILVNNAGIHGADVDGEAFSALVAAGVPIANAEWRKAITQNYESAEAGIRANYYGAKGTCEALIPLLELSDSPRIVNVSSSMGKLEEIPNEWARGALSDVESLTEEKVDEVLNQFLKDFKEGLLESKGWPSFLSAYAVSKAALSAYTRILAKKYPSFCINAVCPGFVKTDLNYNNGYISVDEGAESVVRLALLPDGGPSGLFFFRSEVAPF* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2208 297 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Apr4g2208 297 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Apr4g2208 297 PRINTS Glucose/ribitol dehydrogenase family signature 153 169 IPR002347 -
Apr4g2208 297 PRINTS Glucose/ribitol dehydrogenase family signature 222 241 IPR002347 -
Apr4g2208 297 PRINTS Glucose/ribitol dehydrogenase family signature 241 258 IPR002347 -
Apr4g2208 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Apr4g2208 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 167 IPR002347 -
Apr4g2208 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 222 241 IPR002347 -
Apr4g2208 297 CDD carb_red_PTCR-like_SDR_c 7 297 IPR045313 GO:0016616
Apr4g2208 297 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 297 - -
Apr4g2208 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 282 IPR036291 -
Apr4g2208 297 Pfam short chain dehydrogenase 8 171 IPR002347 -
Apr4g2208 297 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 209 237 IPR020904 GO:0016491
Apr4g2208 297 PANTHER (+)-NEOMENTHOL DEHYDROGENASE-RELATED 1 297 - -
Apr4g2208 297 Gene3D - 2 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2208 Apr-Chr4 31129657 31132626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2208 7 258 Acyl Lipid Metabolism Gene Families AT1G63380 24.324 1.72e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2208 K15095 - gmx:106797124 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2208 4 31129657 31132626 Apr4g2208 4 31129657 31132626 ECH
Apr4g2208 4 31129657 31132626 Apr10g1364 10 25931335 25934518 PCT
Apr10g1365 10 25938612 25941251 Apr4g2208 4 31129657 31132626 PCT