Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1364 ATGGGAGAAGAAACGAAAAGGTATGCAGTAGTGACAGGAGCTAATAAGGGGATTGGTTATGGAATATGCAAGAAATTGGCTTCAAATGGTATTGTGGTAGTGCTTACAGCTAGAAATGAGAAAAGGGGTTTGGAAGCTGTGGAAAAATTGAAAGAGTTTGGACTCTCAGACTTTCTGGTTTTTCATCAACTTGATGTGACTGACCCTCCAAGTGTTGCTACTTTAGCACATTTCATCAAAACCCGATTTGGGAAACTTGACATCTTGGTGAACAATGCGGGTGTTCCTGGTGGAATAGTAAATGGAGAAAATGTTCTGAGAAAGAAAAGGGGTGAAATATCAGATTGGAGTATAATAGTACCTCAAACTTATGAGTTGGCCGAAGAATGTGTTGAAATTAACTTCTTTGGTGCAGAAAGAGTAACTGAAGCTCTTCTTCCCCTCCTTCAACTATCCACTTCACCCAGGATTGTCAATGTCTCCTCTAGAAGAGGAGTATTGAAGAATATCCCAAATGACTGGGCAAGAGGAGTGTTTAGTGACATTGAAAACCTCACAAACAAAAAGCTTATTGAGGTGCTTAGGAATTTTTTGAAAGATTACAAAGAGGGATCATTGGAATCCAAAAACTGGCCACCTGTTCTTTCTGGTTACACCATGTCCAAAACAGCTTTAAATGCCTACACAAGGATGTTGGCTAAGAAGTTTCCTCATTTTCGTGTGAATTGCTTGTGCCCTGACTTTGTTAAGACTGATTTGAACCAGAATGTAGGCTTTTTAAGCATTGATGAAGGTGCTGAAACTCCTGTCAGGCTAGCATTGTTGCCAGATAATGGTCCTTCTGGTCTCTTTTTCTTAAGGGAAGAAGTCCTTTCCTTTTGA 882 0.4002 MGEETKRYAVVTGANKGIGYGICKKLASNGIVVVLTARNEKRGLEAVEKLKEFGLSDFLVFHQLDVTDPPSVATLAHFIKTRFGKLDILVNNAGVPGGIVNGENVLRKKRGEISDWSIIVPQTYELAEECVEINFFGAERVTEALLPLLQLSTSPRIVNVSSRRGVLKNIPNDWARGVFSDIENLTNKKLIEVLRNFLKDYKEGSLESKNWPPVLSGYTMSKTALNAYTRMLAKKFPHFRVNCLCPDFVKTDLNQNVGFLSIDEGAETPVRLALLPDNGPSGLFFLREEVLSF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1364 293 PANTHER OXIDOREDUCTASE-RELATED 1 293 - -
Apr10g1364 293 Pfam short chain dehydrogenase 8 167 IPR002347 -
Apr10g1364 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 278 IPR036291 -
Apr10g1364 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Apr10g1364 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Apr10g1364 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Apr10g1364 293 CDD carb_red_PTCR-like_SDR_c 7 293 IPR045313 GO:0016616
Apr10g1364 293 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 205 233 IPR020904 GO:0016491
Apr10g1364 293 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 293 - -
Apr10g1364 293 Gene3D - 3 293 - -
Apr10g1364 293 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Apr10g1364 293 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Apr10g1364 293 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Apr10g1364 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Apr10g1364 293 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1364 Apr-Chr10 25931335 25934518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1364 10 258 Acyl Lipid Metabolism Gene Families AT1G24360 22.619 9.32e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1364 K15095 - gmx:100802560 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1364 10 25931335 25934518 Apr10g1364 10 25931335 25934518 ECH
Apr4g2208 4 31129657 31132626 Apr10g1364 10 25931335 25934518 PCT