Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1365 ATGGGAGAAGAAACGAAAAGGTATGCAGTAGTGACAGGTGCTAATAAGGGGATTGGCTATGGAATATGCAAGAAATTGGCTTCAAATGGTATTGTAGTGGTGCTTACAGCTAGAAATGAGAAAAGGGGTTTGGAAGCTGTGGAAAAATTGAAAGAGTTTGGACTCTCAGACTTTCTGGTTTTTCATCAACTTGATGTGACTGACCCTCCAAGTGTTGCTACTTTAGCACATTTCATCAAAACCCGATTTGGGAAACTTGACATCTTGGTGAACAACGCAGGTGTTCCTGGGGGAATAGTAAATGGTGAGAATTTTCAAAATTATTTGTTGCAGAAAAGGGGTGAATTGTCAGATTGGAATCTAATATTGTATCAAAATTACGAGTTAGCCAAAGAATGCGTTGAAACGGACTTCTTTGGTGCAGAGAGAGTAACTGAGGCTCTTCTTCCCCTCCTCCAACTATCCACTTCACCCAGGATTGTCAATGTCTCTGGTCAAATAGGACTATTGAAGAACATACCAAATGAGTGGGCAAGAGGAGTTTTTAGTGACATTGAGAACCTTACAAATGAAAAACTTGGAGAAGTGCTTAGAGAGTTTCTAAGAGATTACAAAGAAGGATCACTGGAATCCAAAAATTGGCCACTTGTCGTTTCTGGTTGCACCATGGCAAAAGCAGCTATAAATGCCTACACAAGGATGCTGGCTAAGAAGTTCCCTCATTTTCTCATAAATTGTATATGCCCTGGCTCTGTCAAGACTGATATAAACCATCATAATGGCTTGGTAAGCATTGATGAAGGTTCTGAAAGTCCTGTTAGGCTAGCATTGTTGCCACATGATGGTTCTTCTGGCCTCTTTTTTTCAGTGGATGAGGTGATTCCTTTTTGA 891 0.4052 MGEETKRYAVVTGANKGIGYGICKKLASNGIVVVLTARNEKRGLEAVEKLKEFGLSDFLVFHQLDVTDPPSVATLAHFIKTRFGKLDILVNNAGVPGGIVNGENFQNYLLQKRGELSDWNLILYQNYELAKECVETDFFGAERVTEALLPLLQLSTSPRIVNVSGQIGLLKNIPNEWARGVFSDIENLTNEKLGEVLREFLRDYKEGSLESKNWPLVVSGCTMAKAAINAYTRMLAKKFPHFLINCICPGSVKTDINHHNGLVSIDEGSESPVRLALLPHDGSSGLFFSVDEVIPF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1365 296 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Apr10g1365 296 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Apr10g1365 296 PRINTS Glucose/ribitol dehydrogenase family signature 152 168 IPR002347 -
Apr10g1365 296 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Apr10g1365 296 PRINTS Glucose/ribitol dehydrogenase family signature 240 257 IPR002347 -
Apr10g1365 296 PANTHER OXIDOREDUCTASE-RELATED 1 296 - -
Apr10g1365 296 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 296 - -
Apr10g1365 296 Gene3D - 3 296 - -
Apr10g1365 296 CDD carb_red_PTCR-like_SDR_c 7 296 IPR045313 GO:0016616
Apr10g1365 296 Pfam short chain dehydrogenase 8 171 IPR002347 -
Apr10g1365 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Apr10g1365 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 IPR002347 -
Apr10g1365 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
Apr10g1365 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 281 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1365 Apr-Chr10 25938612 25941251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1365 10 173 Acyl Lipid Metabolism Gene Families AT1G24360 27.879 2.75e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1365 K15095 - gmx:100802560 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2207 4 31126676 31128449 Apr10g1365 10 25938612 25941251 PCT
Apr10g1365 10 25938612 25941251 Apr4g2208 4 31129657 31132626 PCT