Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2207 ATGAAGGTCAAAGTTAAACCGTTCCTTATAAATACGAATGTTCCTCATTGTGATGCTATTATATTAAAGGGACAGGTTGTTTGTGAATTATCTTTCAGGTATGGTGTTGTGACAGGAGCAAATAAGGGGATTGGATTTGGGATATGTAAGAAGTTGGCTTCAAGTGGGATTGTGGTGCTGCTAACAGCTAGAAATGAGAAGAGGGGCTTGGAAGCTGTTGAAAGACTGAAAGAGTTTGGTCTCTCAGACCTTGTGGTTTTTCATCAGCTTGATGTGGATGATCCTGCTAGTGTTGCCAACTTGGTTGATTTCATCAAAACCCAATTTGGGAAACTTGATATCTTGGTGAATAATGCGGCTGTTACTGGGGGCAAATTATTAGATGGTGATCCTTTACTTAGAAAGAGAAAAGGTGAACAAATTGAATGGAGTGAAGTAGGGTATCAAACTTATGAGTTAGCTGAAAAATGTGTGGAAACAAATTTCTATGGCGTAGAAAGGGTTACTGAAGCTCTTGTTCCCCTTCTCCAACTATCTACTTCTCCAAGAATTGTCAATATTTCCTCTAGAGCAGGGTTCTTGAAGAATATATCAAACGAGTGGGCTAGAACAATGTTCAGTGACACTGAAAACCTTACAAGCGAAAAGATTGATGAGGTGCTTAAAGAGTTTCAGAAAGATTTTAAAGAGGGATCATTGGAAATCAAAGGTTGGCCAGCTTTTGCTTCTGCTTATACAATGTCAAAAGCAGGTTTGAATGCTTACACAAGGATAATGGCCAAGAAATACCCTCATTTTCTCATAAACTCTGTGTGCCCTGGTTTTGTCAAAACTGATATGAACAACAACACTGGAAACTTAAGCATTGATGAGGGTTGTGAAACTCCTGTGATGTTGGCATTGTTGCCGAATAGTGGTCCTTCTGGTTGTTTCTTTCATCAGGGTAAAGTGATACCCTTTTGA 963 0.3925 MKVKVKPFLINTNVPHCDAIILKGQVVCELSFRYGVVTGANKGIGFGICKKLASSGIVVLLTARNEKRGLEAVERLKEFGLSDLVVFHQLDVDDPASVANLVDFIKTQFGKLDILVNNAAVTGGKLLDGDPLLRKRKGEQIEWSEVGYQTYELAEKCVETNFYGVERVTEALVPLLQLSTSPRIVNISSRAGFLKNISNEWARTMFSDTENLTSEKIDEVLKEFQKDFKEGSLEIKGWPAFASAYTMSKAGLNAYTRIMAKKYPHFLINSVCPGFVKTDMNNNTGNLSIDEGCETPVMLALLPNSGPSGCFFHQGKVIPF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2207 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 312 IPR036291 -
Apr4g2207 320 Pfam Enoyl-(Acyl carrier protein) reductase 236 285 - -
Apr4g2207 320 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 31 320 - -
Apr4g2207 320 CDD carb_red_PTCR-like_SDR_c 33 320 IPR045313 GO:0016616
Apr4g2207 320 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 232 260 IPR020904 GO:0016491
Apr4g2207 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 110 121 IPR002347 -
Apr4g2207 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 182 190 IPR002347 -
Apr4g2207 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 245 264 IPR002347 -
Apr4g2207 320 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 31 320 - -
Apr4g2207 320 PRINTS Glucose/ribitol dehydrogenase family signature 34 51 IPR002347 -
Apr4g2207 320 PRINTS Glucose/ribitol dehydrogenase family signature 110 121 IPR002347 -
Apr4g2207 320 PRINTS Glucose/ribitol dehydrogenase family signature 176 192 IPR002347 -
Apr4g2207 320 PRINTS Glucose/ribitol dehydrogenase family signature 245 264 IPR002347 -
Apr4g2207 320 PRINTS Glucose/ribitol dehydrogenase family signature 264 281 IPR002347 -
Apr4g2207 320 Gene3D - 29 320 - -
Apr4g2207 320 Pfam short chain dehydrogenase 36 197 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2207 Apr-Chr4 31126676 31128449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2207 24 285 Acyl Lipid Metabolism Gene Families AT1G24360 25.660 4.25e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2207 K15095 - gmx:100789626 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2207 4 31126676 31128449 Apr4g2207 4 31126676 31128449 ECH
Apr4g2207 4 31126676 31128449 Apr10g1365 10 25938612 25941251 PCT
Apr10g1369 10 25957328 25960060 Apr4g2207 4 31126676 31128449 PCT