Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2205 ATGATCCAATCTCTCTCTTTCTCCTTCACATGTTCATTGAGATTCAACATATCTATGGCAGAGGCAAAACTAAGGTATGCTGTTGTTACTGGAGCAAACAAAGGAATAGGATTTGAGACTGTTAAAGAGTTGGCCTCAAATGGAGTGAAGATGGTGCTCACAGCCAGAGATGAGAAGAGAGGCCATGAAGCCATTGAGAGATTGAAAGGGTGTGGTCTCTCTCACTTGGTGATTTTTCATCAACTTGATGTCACTGACTCTGCTAGTATTGCTTCACTAGCAGAGTTTGTTAAGACCCAGTTTGGGAAACTTGATATCTTGGTGAACAATGCAGGAATCAGTGGTGCCAATCCGTATGAAGTGGAGGGTTCAACGTTTAAGTGGGAGGATGTGACTCAAACTTATGAGATGGCTGAGCAGTGCCTAACAACAAACTACTATGGTGCAAAGCAAGCAGCTGAGGCATTTCTTCCCCTTCTGCAGTTATCTGATTCACCTAGGATTGTTAATGTTTCCTCCCAAGCAGGCCTGTTAAAGTGCATAGCAAATGGATGGGCAAAAGGGGTGCTTGGTGATGGTGAAAATCTTACAGAAGAGAGAATAGATGAGGTACTAAAAGAGTTTCTCAAAGACTTCAAAGAAGGTTTACTAGAAAACAATGGCTGGCCAACCATCTTGAGTGCCTATAGGGTCTCAAAAGCAGCCTTGAATTCTTACACAAGGATTCTTGCAAAGAAGCATCCAAATATGTGCATTAATTGTATGTGTCCTGGTTTTGTCAAAACAGACATAAACAGAAACACTGGCATCTTATCTGTTGAAGAAGGTGCTGCTAGTGTTGTGAGATTAGCACTGCTACCTGATGGTTCCCCTTCTGGCCTCTTCTTTATTAGGGGGGAGCTTTCAAACTTGTAA 915 0.424 MIQSLSFSFTCSLRFNISMAEAKLRYAVVTGANKGIGFETVKELASNGVKMVLTARDEKRGHEAIERLKGCGLSHLVIFHQLDVTDSASIASLAEFVKTQFGKLDILVNNAGISGANPYEVEGSTFKWEDVTQTYEMAEQCLTTNYYGAKQAAEAFLPLLQLSDSPRIVNVSSQAGLLKCIANGWAKGVLGDGENLTEERIDEVLKEFLKDFKEGLLENNGWPTILSAYRVSKAALNSYTRILAKKHPNMCINCMCPGFVKTDINRNTGILSVEEGAASVVRLALLPDGSPSGLFFIRGELSNL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2205 304 PRINTS Glucose/ribitol dehydrogenase family signature 26 43 IPR002347 -
Apr4g2205 304 PRINTS Glucose/ribitol dehydrogenase family signature 102 113 IPR002347 -
Apr4g2205 304 PRINTS Glucose/ribitol dehydrogenase family signature 160 176 IPR002347 -
Apr4g2205 304 PRINTS Glucose/ribitol dehydrogenase family signature 229 248 IPR002347 -
Apr4g2205 304 PRINTS Glucose/ribitol dehydrogenase family signature 248 265 IPR002347 -
Apr4g2205 304 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 25 303 - -
Apr4g2205 304 Pfam short chain dehydrogenase 26 179 IPR002347 -
Apr4g2205 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 102 113 IPR002347 -
Apr4g2205 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 174 IPR002347 -
Apr4g2205 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 229 248 IPR002347 -
Apr4g2205 304 CDD carb_red_PTCR-like_SDR_c 25 303 IPR045313 GO:0016616
Apr4g2205 304 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 25 303 - -
Apr4g2205 304 Gene3D - 18 304 - -
Apr4g2205 304 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 290 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2205 Apr-Chr4 31119803 31122227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2205 27 190 Miscellaneous Gene Families AT2G29150 34.118 1.42e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2205 K15095 - gmx:100527070 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2205 4 31119803 31122227 Apr4g2205 4 31119803 31122227 ECH
Apr4g2205 4 31119803 31122227 Apr10g1369 10 25957328 25960060 PCT
Apr10g1370 10 25961943 25965007 Apr4g2205 4 31119803 31122227 PCT