Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2204 ATGGCAGAGGCAAAACTAAGGTATGGTGTTGTTACTGGGGCAAACAAAGGGATAGGACTTGAGACTGTTAAAGAGTTGGCATCAAATGGAGTGAAGGTGGTGCTCACTGCCAGAGATGAGAAGAGAGGCCATGAAGCCATTGAGAGAATGAAAGAGTGTGGTCTCTCTCATTTGGTCATTTTTCATCAACTTGATGTCACTGACTCTGCTAGTATTGCTTCACTAGTACAGTTTGTTAAGACCCACTTTGGAAAACTCGATATCTTGGTGAACAACGCAGGAATCAGTGGTGTCAATCCATATGAAATGGTAAGTGTGGGATCAACAATTAACTGGAAGGAACTGACTCAAACTTCTGAGATGGTAGAAAAGTGCCTAACAACAAACTACTATGGTGCAAAGGAAACAACCGAGGCATTTCTTCCCCTTTTGCAGTTATCCAAGTCACCTAGGATTGTTAATGTTTCCTCCCAAGCAGGCCTGTTGAAGTACATATCAAATGAATGGGCAAAAGGGGTGTTTGGTGATGCTGAAAATCTTACAGAAGAGAGAATAGATGAGGTAGTGAAAGAGTTTCTCAAAGACTTCAAAGAAGGTTCACTTGAAAACAAAGGTTGGCCAACCTTTTTGTCTGCCTATATAGTTTCAAAAGCAGCCATGAATTGTTACACAAGGATTCTAGCAAAGAAGCATTCAAACATGTGCATCAATTGTGTGTGTCCTGGTTTTGTCAAAACAGACATAAACAGAAACACTGGTATCTTATCTGTTCACCAAGGTGCTGCCAGTGTCGTGAAATTAGCACTTTTGCCTAATGGTTCCCTTTCTGGCCTCTTCTTCAGTAGGCAAGAACAATCAAACTTTTGA 867 0.4118 MAEAKLRYGVVTGANKGIGLETVKELASNGVKVVLTARDEKRGHEAIERMKECGLSHLVIFHQLDVTDSASIASLVQFVKTHFGKLDILVNNAGISGVNPYEMVSVGSTINWKELTQTSEMVEKCLTTNYYGAKETTEAFLPLLQLSKSPRIVNVSSQAGLLKYISNEWAKGVFGDAENLTEERIDEVVKEFLKDFKEGSLENKGWPTFLSAYIVSKAAMNCYTRILAKKHSNMCINCVCPGFVKTDINRNTGILSVHQGAASVVKLALLPNGSLSGLFFSRQEQSNF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2204 288 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 274 IPR036291 -
Apr4g2204 288 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 288 - -
Apr4g2204 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Apr4g2204 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 IPR002347 -
Apr4g2204 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 213 232 IPR002347 -
Apr4g2204 288 Gene3D - 4 288 - -
Apr4g2204 288 Pfam short chain dehydrogenase 10 165 IPR002347 -
Apr4g2204 288 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Apr4g2204 288 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Apr4g2204 288 PRINTS Glucose/ribitol dehydrogenase family signature 144 160 IPR002347 -
Apr4g2204 288 PRINTS Glucose/ribitol dehydrogenase family signature 213 232 IPR002347 -
Apr4g2204 288 PRINTS Glucose/ribitol dehydrogenase family signature 232 249 IPR002347 -
Apr4g2204 288 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 4 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2204 Apr-Chr4 31115742 31117713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2204 10 248 Miscellaneous Gene Families AT2G29150 28.512 1.86e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2204 K15095 - gmx:100778451 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2204 4 31115742 31117713 Apr4g2204 4 31115742 31117713 ECH
Apr4g2204 4 31115742 31117713 Apr10g1370 10 25961943 25965007 PCT
Apr10g1371 10 25966799 25969579 Apr4g2204 4 31115742 31117713 PCT