Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1265 ATGGGATCCGAAACACAGTCACAACTTCATATTGTTGACTTCACTGATGAAAGCATGAAGCCTGGCAGTGAAACATGGCTCTCAGCTTGCCATGTTCTGAAGACTGCATTAGAGGACAATGGTTGTTTCGTGGCACGCTATGATAAAGTTGGCAAGGAGCTTTGTGACTCTGTTGTCTTTGCCATGGAAAATTTGTTTGGTCTCCCAGTGGAAACAAAAGCCAAAAAGACTAGTGACAAACTTTTCCATGGCTACTTAGGACAAGTCTCATGGCTCCCTTTGTATGAATCTTTGGGCATTGACAATCCGTTGTCTATGGAAGGATGTCAAAATTTCGCTAACATAATGTGGCCAGAAGGAAATGATCATTTCTGTGAAAGTGTCAATAAGTATGCTAAGCTGTTGGGAGAATTAGATCATATGGTAAAGAGAATGGTGTTTGAGAGCTATGGTGTGGACATGCAACGATGCAGTTCTTTCATAGAATCAAACAATTATCTCCTTCGATGCTCCACATACAGAGCGCCCCAGATGGATGAAAATGACTTGGGACTTCATTCTCACACAGACTTGACCATCACATCCATAGTACATCAGCTCAATAATCTAAATGGCTTGGAAATCAAACTGAAGGATGGGGAGTGGAGTGGGATTGATGCCTCGCCCTCCTTGTTTGTGGTCATGGCAGGTGACGCACTCAAGGTGTGGAGTAATGGGAGGATACGCCCCTGTGAACACAGAGTTATAATGAATGCAAAGAAAAGCAGATACTCTATGGGACTATTTACTTTCAGTGGTGAGATGATGGAGATACCAAAGGAGTTAGTTAATGAAGAACATCCCTTGCGTTATAAACCAATATTTGACCACTATGAATTCCTTCGTTTCTTCGACAAAGAGAAAATCAAAGAATCTGATTCTCGAATCCAAGCGTATTGTGGGATCTGA 948 0.4209 MGSETQSQLHIVDFTDESMKPGSETWLSACHVLKTALEDNGCFVARYDKVGKELCDSVVFAMENLFGLPVETKAKKTSDKLFHGYLGQVSWLPLYESLGIDNPLSMEGCQNFANIMWPEGNDHFCESVNKYAKLLGELDHMVKRMVFESYGVDMQRCSSFIESNNYLLRCSTYRAPQMDENDLGLHSHTDLTITSIVHQLNNLNGLEIKLKDGEWSGIDASPSLFVVMAGDALKVWSNGRIRPCEHRVIMNAKKSRYSMGLFTFSGEMMEIPKELVNEEHPLRYKPIFDHYEFLRFFDKEKIKESDSRIQAYCGI* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1265 315 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 163 265 IPR005123 -
Apr4g1265 315 SUPERFAMILY Clavaminate synthase-like 8 300 - -
Apr4g1265 315 Pfam 2OG-Fe(II) oxygenase superfamily 164 264 IPR044861 -
Apr4g1265 315 Gene3D - 7 313 IPR027443 -
Apr4g1265 315 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 314 - -
Apr4g1265 315 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 4 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1265 Apr-Chr4 11512401 11515087 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1265 118 285 Glycosyltransferase AT5G59530 29.545 3.14e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1265 - - gmx:100775440 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1265 4 11512401 11515087 Apr8g0877 8 9321273 9324817 PCT
Apr8g0880 8 9406662 9410320 Apr4g1265 4 11512401 11515087 PCT